Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0635
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0468 - 21083754-21083869,21083986-21084069,21085633-210859...    30   1.3  
03_04_0088 + 17209568-17209876,17209966-17210595,17210846-172110...    28   5.3  
08_02_0845 - 21809924-21810265,21810360-21810365                       28   7.0  
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65...    28   7.0  

>06_03_0468 -
           21083754-21083869,21083986-21084069,21085633-21085920,
           21087525-21087687
          Length = 216

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 489 YS*ICNIFEISPKNNYFHFC 430
           Y+ + N+++++P NNY H+C
Sbjct: 25  YTVVLNVYDLTPLNNYLHWC 44


>03_04_0088 +
           17209568-17209876,17209966-17210595,17210846-17211019,
           17211434-17211515,17212091-17212278,17212993-17213152,
           17213441-17213763,17213860-17213967,17214116-17214189,
           17214249-17214361,17214461-17214741
          Length = 813

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 204 IKILHLYPLSGTCNTSSLRTYHGTS*RGV 118
           IK+LHL+PL+  C+      +HG   R V
Sbjct: 665 IKVLHLHPLTWACDLVDPSRWHGEEPRPV 693


>08_02_0845 - 21809924-21810265,21810360-21810365
          Length = 115

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 322 HGHYTGGSRVRIPPKEDIYMINIMYFPALWMSIKYMYVYN 203
           HG    G     PP   +YM++++  P L  S   MY+Y+
Sbjct: 63  HGRARRGDNAGNPPPSSLYMLSVVPVPRLCCS---MYIYD 99


>03_01_0082 +
           653041-653137,653219-653496,653596-653689,653804-653886,
           654027-654247,654395-654533,654628-654710,654824-655036,
           655099-655494,655587-655758,656085-656276,656363-656569,
           656661-656753,656957-657156,657329-657838,658114-658184,
           658322-658963,659057-659207,659425-659665
          Length = 1360

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 370 TCNSRTVTAVWCSGK*HGHYTGGSRVR 290
           T NS      WCS K  G + GGS VR
Sbjct: 822 TGNSINSAGKWCSSKLLGEHVGGSAVR 848


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,301,871
Number of Sequences: 37544
Number of extensions: 311666
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)