Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0635
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    29   2.7  
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ...    29   2.7  
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou...    29   2.7  

>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 289 IPPKEDIYMINIMYFPALWMSIKYMYVYNKN 197
           + PK  IY++N ++    W+  KY Y  N+N
Sbjct: 721 VTPKSLIYVMNCLFNTVRWLLGKYTYQKNRN 751


>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform a
           protein.
          Length = 1027

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 289 IPPKEDIYMINIMYFPALWMSIKYMYVYNKN 197
           + PK  IY++N ++    W+  KY Y  N+N
Sbjct: 701 VTPKSLIYVMNCLFNTVRWLLGKYTYQKNRN 731


>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 1027

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 289 IPPKEDIYMINIMYFPALWMSIKYMYVYNKN 197
           + PK  IY++N ++    W+  KY Y  N+N
Sbjct: 701 VTPKSLIYVMNCLFNTVRWLLGKYTYQKNRN 731


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,774,993
Number of Sequences: 27780
Number of extensions: 276564
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)