Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0634
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    29   0.24 
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   1.3  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   2.9  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   2.9  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   5.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.7  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    24   8.9  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    24   8.9  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   8.9  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    24   8.9  

>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 399 CVLIMTSASMRCLCRPCSRACGFGTNFRF 313
           C + +    + CL  PC+   GF TN++F
Sbjct: 58  CSVCLNMFHLSCLSPPCTSMMGFSTNYQF 86


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 438 CSFRGGDEVCVPFCVLIMTSASM 370
           C F GG   CVP CV+    A M
Sbjct: 233 CRFFGGYGACVPLCVVAAAFADM 255


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 195 GASPPSR*TRTNVLSVCPACRP-TTPTWRLAPAG 97
           G +   R   TN    C  C+  TTP WR +P G
Sbjct: 619 GDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 233 VITPLLLDVGWSPAEIPVPPVTPA 304
           V TP+   V  + A +PVPP  PA
Sbjct: 379 VTTPVAAPVAAAAAAVPVPPPAPA 402


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 249 SWTWAGHPLKYPCP 290
           +W+W G+P+K P P
Sbjct: 495 TWSWDGYPIKGPQP 508


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 288  GTGISAGDQPTSRRRGVMTTCTVKLCLARDLGA 190
            G+G+ AG   TSR    + TCT+  C A  +GA
Sbjct: 1748 GSGLIAG--VTSRAYNDIFTCTLVTCRAVGIGA 1778


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 256 VQEEGGDDDLYS*TVSRSRPRGISTISIDQN*RP 155
           +++ GG D+LY  T+S+ R   +     +Q  +P
Sbjct: 225 IKDSGGRDNLYIQTISKPRRSYVQNNKSEQTIKP 258


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -2

Query: 209 SLATSGHLHHLDRPELTSCLFVLRVAPPHQHGAWPRPVHVCDSDA 75
           SLA  G L H D       + V+ V+P   H    RP+HV DS A
Sbjct: 291 SLAAGGSLCHPD-------ISVMIVSPICAHSLSLRPIHVPDSMA 328


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 92  REPAGARRHVGVVGRHAGQTDRTLVLVYRDGGDAPRSRAR 211
           R+P+ +RR    +G  +G  ++  V+   D G   RS++R
Sbjct: 656 RKPSWSRRLAAAIGFSSGSPEKKHVITSSDAGH-QRSKSR 694


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 221 LNCVSLATSGHLHHLDRPELTSCLFVLRVAPP 126
           +N  S + +G  H+L+R +++   F+L+   P
Sbjct: 205 VNSFSKSANGFSHNLNRYDISPAAFILKSGSP 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,813
Number of Sequences: 5004
Number of extensions: 40639
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)