Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0634
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 39 0.002
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 36 0.011
05_01_0569 + 5056261-5057712 30 0.71
12_02_1255 + 27360958-27362682 29 1.6
07_03_1170 - 24505743-24505875,24506087-24506475,24507133-245073... 29 1.6
07_01_0469 - 3552409-3553368 28 2.9
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 28 2.9
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 28 3.8
05_04_0123 + 18210069-18213737 28 3.8
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 28 3.8
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 28 3.8
12_02_1256 - 27366282-27368021 27 5.0
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 27 5.0
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 27 5.0
06_03_0101 + 16659185-16660546 27 6.6
04_04_1141 + 31180906-31181249,31181719-31181862,31181971-311820... 27 6.6
10_06_0172 + 11473892-11474896 27 8.7
07_03_1144 + 24331104-24331292,24331387-24331611,24332133-243325... 27 8.7
03_01_0648 - 4749150-4749275,4749902-4749986,4750761-4750861,475... 27 8.7
01_06_0667 - 31048987-31049134,31049630-31049865,31050720-310509... 27 8.7
01_05_0213 - 19355785-19356522 27 8.7
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/57 (42%), Positives = 30/57 (52%)
Frame = -3
Query: 391 DNDICKYEMFVQTLQQSLWFWNQFQIPNKRGSYRGHGYFSG*PAHVQEEGGDDDLYS 221
D DI KY+ F QTLQQS F +F+ ++ S G G + A DDDLYS
Sbjct: 755 DADIRKYQAFAQTLQQSRGFGTEFRFADQPAS--GAGAAADPFASAAAAADDDDLYS 809
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 36.3 bits (80), Expect = 0.011
Identities = 23/57 (40%), Positives = 28/57 (49%)
Frame = -3
Query: 391 DNDICKYEMFVQTLQQSLWFWNQFQIPNKRGSYRGHGYFSG*PAHVQEEGGDDDLYS 221
D DI KY+ F QTLQQS F ++F+ G G + A DDDLYS
Sbjct: 764 DADIRKYQAFAQTLQQSRGFGSEFRFERTEA---GAGAAADPFASAAAVADDDDLYS 817
>05_01_0569 + 5056261-5057712
Length = 483
Score = 30.3 bits (65), Expect = 0.71
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 327 TNFRFPTNAGVTGGTGISAGDQPTSRRRG 241
TN P+N +GG G G++PT+ RRG
Sbjct: 88 TNSTSPSNRDGSGGGGGGEGNEPTAERRG 116
>12_02_1255 + 27360958-27362682
Length = 574
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 242 PLLLDVGWSPAEIPVPPVTPAFVGNLKLVPKPQA 343
PL+L VGW PA I V AF+G ++++ P++
Sbjct: 181 PLILLVGWLPAAISV-----AFLGTIRIIRAPRS 209
>07_03_1170 -
24505743-24505875,24506087-24506475,24507133-24507369,
24507967-24508136,24510196-24510316
Length = 349
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 182 GGDAPRSRARHSLTVQVVITPLLLD 256
GGDA ++ HSL+V V+++PL D
Sbjct: 211 GGDADTTQLYHSLSVPVIVSPLTGD 235
>07_01_0469 - 3552409-3553368
Length = 319
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 182 GGDAPRSRARHSLT--VQVVITPLLLDVGWSPAEIPVPPVTPAFVGNLKLVPKP 337
GG R+ R S T V++ + P +PA PVPP PA L P P
Sbjct: 183 GGVRIRTTPRKSTTAPVRIQLAPRNPPPSAAPAAPPVPPAAPAVPAAPALAPVP 236
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 203 RARHSLTVQVVITPLLLDVGWSPAEIPVPPV 295
R++ S+ VQ VITP ++ E+ VPP+
Sbjct: 1326 RSKSSVAVQAVITPEVIQPSAMEEEVVVPPI 1356
>08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +2
Query: 164 VLVYRDGGDAPRSRARHSLTVQVVITPLLLDVGWSPAEIPVPPVTPAFVGNLKLVPKPQA 343
++++R GG R RH + + PL+L W PAE P + + L + +
Sbjct: 1321 LIIHRHGGQLILYRGRHYNPKKRPVIPLML---WKPAEPVYPRLIKTTIEGLTVEETKEM 1377
Query: 344 LLQGLH 361
+GL+
Sbjct: 1378 RKKGLY 1383
>05_04_0123 + 18210069-18213737
Length = 1222
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -3
Query: 403 VLCLDN-DICKYEMFVQ--TLQQSLWFWNQF 320
V+ + N D+ + F+Q TLQ LWFW F
Sbjct: 981 VMSVQNLDLISCDCFIQYDTLQSPLWFWKSF 1011
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 248 LLDVGWSPAEIPVPPVTPAFVGNLKLVPKPQA 343
L + W+P P PP P F + P P A
Sbjct: 42 LFPIEWTPPPSPPPPPAPDFTSDPSTPPAPDA 73
>02_01_0767 -
5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 209 RHSLTVQVVITPLLLDVGWSPAE-IPVPPVTP 301
R+S+T + ++PLL D WS E +P VTP
Sbjct: 604 RNSITAFIKVSPLLKDAIWSYLEQYDLPVVTP 635
>12_02_1256 - 27366282-27368021
Length = 579
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 242 PLLLDVGWSPAEIPVPPVTPAFVGNLKLVPKPQA 343
PL+L VGW PA + + AF+G ++++ P++
Sbjct: 179 PLILLVGWLPAAVSL-----AFLGTIRIIRTPRS 207
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 41 AAVCLELHVRCLRHYRIREPAGARRHVGVVGRHAGQ 148
A C +V+C+ + +RE R+H V +AG+
Sbjct: 190 ALYCGVCNVKCMTRFNLREHEAGRKHRDKVASNAGE 225
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 191 APRSRARHSLTVQVVITPLLLDVGWSPAEIPVPPVTPAFVGNLKLVPKPQ 340
AP ++ S Q + P + +PAE P PP TP + P P+
Sbjct: 256 APATKPPPSFPPQ--LAPTMPPPAHAPAETPAPPTTPPALPPATTAPSPK 303
>06_03_0101 + 16659185-16660546
Length = 453
Score = 27.1 bits (57), Expect = 6.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 222 LYRSSSPPSSWTW 260
LYR PP SW+W
Sbjct: 160 LYRDGEPPGSWSW 172
>04_04_1141 +
31180906-31181249,31181719-31181862,31181971-31182054,
31182196-31182236,31182726-31182803,31183050-31183139,
31183236-31183325,31183808-31183962,31184737-31184796
Length = 361
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +2
Query: 287 PPVTPAFVGNLKLVPKPQALLQGLHKHLILADVIIKTQNGTQTSSPPR 430
PP PA L + Q LL LH H ADV+ + G S R
Sbjct: 38 PPSLPA--QRTHLTAEAQTLLLFLHMHRCFADVVAGNETGAAWSDKHR 83
>10_06_0172 + 11473892-11474896
Length = 334
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 18 IYIYLVATPPYV*NYTSDVCVTIAYVNRPGPGAMLVWWGDTQDKQTGR*FW 170
+ + L A V + S C + PG GA+ VW GD + GR W
Sbjct: 160 VAVVLTAADVAVEGFCSSACGAHGS-SAPGGGAVHVWVGDASAQCPGRCAW 209
>07_03_1144 +
24331104-24331292,24331387-24331611,24332133-24332521,
24332762-24332856,24333300-24333673
Length = 423
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 182 GGDAPRSRARHSLTVQVVITPLL 250
GGDA +R H L+V ++ PL+
Sbjct: 173 GGDADTTRLYHLLSVPAIVAPLI 195
>03_01_0648 -
4749150-4749275,4749902-4749986,4750761-4750861,
4750933-4751191,4751382-4751434,4752828-4752990,
4753181-4754616
Length = 740
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +2
Query: 83 YRIREPAGARRHVGVVGRHAGQTDRTLVLVYRDGGDAPRSRARHSLTV 226
Y + P H G R+ G LVL RD G + AR ++ V
Sbjct: 51 YGLHGPTRYHAHAGAPARYGGDPCFPLVLNRRDDGGGQQGGARGAIHV 98
>01_06_0667 -
31048987-31049134,31049630-31049865,31050720-31050926,
31051005-31051197,31051282-31051652
Length = 384
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 87 AYVNRPGPGA--MLVWWGDTQDKQTGR 161
A++ G GA +V WGDT D +GR
Sbjct: 134 AFITLEGAGADKTIVQWGDTADSPSGR 160
>01_05_0213 - 19355785-19356522
Length = 245
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 212 HSLTVQVVITPLLLDVGWSPAEIPVPPVTPAF 307
H L + P L +SPA+ P PP +PA+
Sbjct: 21 HDLEDEEPYCPPPLSPPYSPAQSPPPPTSPAY 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,721
Number of Sequences: 37544
Number of extensions: 345861
Number of successful extensions: 1225
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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