Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0634
(438 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 51 5e-07
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08) 29 2.2
SB_40261| Best HMM Match : Glyco_transf_10 (HMM E-Value=5.5) 29 2.2
SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0) 28 2.9
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 28 3.9
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 28 3.9
SB_2354| Best HMM Match : GRP (HMM E-Value=3.9) 28 3.9
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 27 6.8
SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_364| Best HMM Match : Tim17 (HMM E-Value=0.45) 27 6.8
SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 8.9
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 50.8 bits (116), Expect = 5e-07
Identities = 32/63 (50%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Frame = -3
Query: 391 DNDICKYEMFVQTLQQSLWFWNQFQIPNK--RGSYRGHGYFSG*PAHVQ----EEGGDDD 230
DNDI KYEMF QTLQQS F F+ PN+ GS G G G Q + GDDD
Sbjct: 566 DNDIRKYEMFAQTLQQSRGFGGNFRFPNQGTGGSQGGAGGAGGGSGDNQGDLYGDDGDDD 625
Query: 229 LYS 221
LYS
Sbjct: 626 LYS 628
>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
Length = 1183
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 98 PAGARRHVGVVGRHAGQTDRTLVLVYRDGGDAPRSRARHSLTVQV 232
P +RH G RHAG D +Y D DA R R S +++V
Sbjct: 787 PYAEKRHEGNQDRHAGNVD-----IYNDSVDASRVRDYSSSSMRV 826
>SB_40261| Best HMM Match : Glyco_transf_10 (HMM E-Value=5.5)
Length = 480
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 146 QTDRTLVLVYRDGGDAPRSRARHSLTVQVVITPLLLDVGW 265
+T RT+ + G +S+ R ++T VIT L+ +GW
Sbjct: 255 ETTRTMQISTVSHGTTQQSKIRKTITDAAVITGLVAGIGW 294
>SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 818
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 402 FCVLIMTSASMRCLCRPCSRACGFGTNFRFPTNAGVTG 289
+ ++ S R L PCS++CG G + + T A +TG
Sbjct: 237 YVYMLRKSRGRRSLDTPCSKSCGSGVSSTY-TTAEMTG 273
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 186 PPSR*TRTNVLSVCPACRPTTP 121
PPS + SVCP CRP +P
Sbjct: 214 PPSYSFKDEECSVCPCCRPGSP 235
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 186 PPSR*TRTNVLSVCPACRPTTP 121
PPS + SVCP CRP +P
Sbjct: 214 PPSYSFKDEECSVCPCCRPGSP 235
>SB_2354| Best HMM Match : GRP (HMM E-Value=3.9)
Length = 216
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 301 GSYRGHGYFSG*PAHVQEEGGDDDL 227
G Y G G F G A+ EEG DD L
Sbjct: 174 GEYNGEGGFEGDEAYGYEEGYDDGL 198
>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1837
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -2
Query: 221 LNCVSLATSGHLHHLDRPELT---SCLFVLRVAPPHQHGAWPRPVH 93
LNC ATS LH+ D+P +T L R + HG P H
Sbjct: 1281 LNCPRSATSVRLHNTDKPWITPRIKTLISRRQSALAAHGKDPHEFH 1326
>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1565
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 131 GRHAGQTDRTLVLVYRDGGDAPRSRARHSLTVQVVITPLLLDVGWSPAEIP 283
G+H+G+ + LV D PRS HS ++ + + L G + EIP
Sbjct: 1399 GKHSGE-ETNRFLVKFDTRKIPRSATVHSASLFLYLVDARLSAGVNQEEIP 1448
>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 330 QNHKLCCKVCTNISYLQMSLSRHRTAH 410
++H C C + + Q+ L RH+T H
Sbjct: 384 ESHSHTCDECGKVFHSQIYLKRHKTVH 410
>SB_13174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1108
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 197 RSRARHSLTVQVVITPLLLDVGWSPAEIPVPPVTPAFVGNLKLVPKPQALLQGLHK-HLI 373
+S+ ++T VIT L+ +GW ++ T N K A + G+H+ +
Sbjct: 895 QSKITKTITDAAVITGLVAGIGWVGRKVLREDFTKDPSANAMNYAKMTAAVAGIHRAREV 954
Query: 374 LADVIIKTQ 400
A V+ K+Q
Sbjct: 955 CARVVCKSQ 963
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 215 SLTVQVVITPLLLDVGWSPAEIPVPPVTPAFVGNLKLVP 331
++TV +PLL D+ PV P++ +F G + VP
Sbjct: 186 TVTVMATPSPLLTDITAGATPAPVLPLSGSFTGKGENVP 224
>SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 27.1 bits (57), Expect = 6.8
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +2
Query: 302 AFVGNLKLVPKPQALLQGLHKHL-ILADV-IIKTQNG 406
A +G+LKLV KPQ +L G + I A+V + T+NG
Sbjct: 411 ATLGDLKLVEKPQPILLGANDFSNIKANVKVSSTENG 447
>SB_364| Best HMM Match : Tim17 (HMM E-Value=0.45)
Length = 437
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 197 RSRARHSLTVQVVITPLLLDVGWSPAEIPVPPVTPAFVGNLKLVPKPQALLQGLHK-HLI 373
+S+ ++T VIT L+ +GW ++ T N K A + G+H+ +
Sbjct: 224 QSKITKTITDAAVITGLVAGIGWVGRKVLREDFTKDPSANAMNYAKMTAAVAGIHRAREV 283
Query: 374 LADVIIKTQ 400
A V+ K+Q
Sbjct: 284 CARVVCKSQ 292
>SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1554
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 214 VSRSRPRGISTISIDQN*RPVCLSCVS 134
VS RP G I+ID+N +P+ + CV+
Sbjct: 387 VSIKRPAGSKVITIDEN-KPLVIRCVA 412
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,910,798
Number of Sequences: 59808
Number of extensions: 372352
Number of successful extensions: 1152
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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