Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0634
(438 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 45 3e-05
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 42 2e-04
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 39 0.002
At5g64750.1 68418.m08142 AP2 domain-containing transcription fac... 29 1.4
At3g26430.1 68416.m03294 GDSL-motif lipase/hydrolase family prot... 29 1.4
At2g31810.3 68415.m03885 acetolactate synthase small subunit, pu... 29 1.8
At2g31810.2 68415.m03884 acetolactate synthase small subunit, pu... 29 1.8
At2g31810.1 68415.m03883 acetolactate synthase small subunit, pu... 29 1.8
At1g02300.1 68414.m00173 cathepsin B-like cysteine protease, put... 29 1.8
At3g63100.1 68416.m07087 glycine-rich protein 28 2.4
At3g59700.1 68416.m06661 lectin protein kinase, putative similar... 28 2.4
At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase cyc... 27 5.5
At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase cyc... 27 5.5
At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase cyc... 27 5.5
At3g55850.2 68416.m06206 amidohydrolase family protein weak simi... 27 5.5
At3g55850.1 68416.m06205 amidohydrolase family protein weak simi... 27 5.5
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 27 7.3
At1g26170.1 68414.m03194 importin beta-2 subunit family protein ... 27 7.3
At5g37880.1 68418.m04564 hypothetical protein predicted protein,... 26 9.7
At4g03230.1 68417.m00442 S-locus lectin protein kinase family pr... 26 9.7
At3g02130.1 68416.m00180 leucine-rich repeat transmembrane prote... 26 9.7
At1g45249.2 68414.m05192 ABA-responsive element-binding protein ... 26 9.7
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 44.8 bits (101), Expect = 3e-05
Identities = 24/57 (42%), Positives = 29/57 (50%)
Frame = -3
Query: 391 DNDICKYEMFVQTLQQSLWFWNQFQIPNKRGSYRGHGYFSG*PAHVQEEGGDDDLYS 221
D DI KY+ F QTLQQS F ++F+ N GS G G DDDLY+
Sbjct: 753 DADIRKYQAFAQTLQQSRGFGSEFRFENSAGSGATTGVADPFATSAAAAGDDDDLYN 809
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 41.5 bits (93), Expect = 2e-04
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 391 DNDICKYEMFVQTLQQSLWFWNQFQIPNKRGSYRGHGYFSG*P-AHVQEEGGDDDLYS 221
D DI KY+ F QTLQQS F ++F+ + G R G + P A DDDLYS
Sbjct: 753 DADIRKYQAFAQTLQQSRGFGSEFRFDSTAGVGRTTGVAAADPFATSAAAADDDDLYS 810
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 38.7 bits (86), Expect = 0.002
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = -3
Query: 391 DNDICKYEMFVQTLQQSLWFWNQFQIPN----KRGSYRGHGYFSG*PAHVQEEGG---DD 233
D DI KY+ F QTLQQS F ++F+ P+ G++ G G GG DD
Sbjct: 752 DADIRKYQAFAQTLQQSRGFGSEFRFPDAPTGTTGAFPGAAATVGGVDPFATSGGAADDD 811
Query: 232 DLYS 221
DLYS
Sbjct: 812 DLYS 815
>At5g64750.1 68418.m08142 AP2 domain-containing transcription
factor, putative contains similarity to transcription
factor
Length = 391
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 348 SRACGFGTNFRFPTNAGVTGGTGISAGDQPTSRRRGV 238
S G G + + T A + T +GDQP R RGV
Sbjct: 152 SNMSGPGPTYEYTTTATASSETSSFSGDQPRRRYRGV 188
>At3g26430.1 68416.m03294 GDSL-motif lipase/hydrolase family protein
similar to early nodulin ENOD8 [Medicago sativa]
GI:304037; contains InterPro Entry IPR001087 Lipolytic
enzyme, G-D-S-L family
Length = 380
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -1
Query: 366 CLCRP--CSRACGFGTNFRFPTNAGVTGGTGISAGDQP 259
CL P CS +C F F F + TGG S G P
Sbjct: 16 CLIHPRACSPSCNFPAIFNFGDSNSDTGGLSASFGQAP 53
>At2g31810.3 68415.m03885 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 469
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Frame = -1
Query: 396 VLIMTSASMRCL---CRPCSRACGFGTNFRFPTNAGVTGGTGISAGDQPTSRRRGVMTTC 226
+ + +S S+RCL C S A T FP G GD+ R G + +
Sbjct: 4 ISVSSSPSIRCLRSACSDSSPALVSSTRVSFPAKISYLSGISSHRGDEMGKRMEGFVRSV 63
Query: 225 TVKLCLA--RDLGASPPSR*TRTNVLSV 148
K+ A + ++ P R + +SV
Sbjct: 64 DGKISDASFSEASSATPKSKVRKHTISV 91
>At2g31810.2 68415.m03884 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 492
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Frame = -1
Query: 396 VLIMTSASMRCL---CRPCSRACGFGTNFRFPTNAGVTGGTGISAGDQPTSRRRGVMTTC 226
+ + +S S+RCL C S A T FP G GD+ R G + +
Sbjct: 4 ISVSSSPSIRCLRSACSDSSPALVSSTRVSFPAKISYLSGISSHRGDEMGKRMEGFVRSV 63
Query: 225 TVKLCLA--RDLGASPPSR*TRTNVLSV 148
K+ A + ++ P R + +SV
Sbjct: 64 DGKISDASFSEASSATPKSKVRKHTISV 91
>At2g31810.1 68415.m03883 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 491
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Frame = -1
Query: 396 VLIMTSASMRCL---CRPCSRACGFGTNFRFPTNAGVTGGTGISAGDQPTSRRRGVMTTC 226
+ + +S S+RCL C S A T FP G GD+ R G + +
Sbjct: 4 ISVSSSPSIRCLRSACSDSSPALVSSTRVSFPAKISYLSGISSHRGDEMGKRMEGFVRSV 63
Query: 225 TVKLCLA--RDLGASPPSR*TRTNVLSV 148
K+ A + ++ P R + +SV
Sbjct: 64 DGKISDASFSEASSATPKSKVRKHTISV 91
>At1g02300.1 68414.m00173 cathepsin B-like cysteine protease,
putative similar to cathepsin B-like cysteine proteinase
GI:609175 from [Nicotiana rustica]
Length = 379
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 420 DEVCVPFCVLIMTSASMRCLCRPCSRACGFGTNFRFPTNA 301
D C+ + + + SA+ C C CGFG N FP A
Sbjct: 162 DRFCIKYNLNVSLSANDVIAC--CGLLCGFGCNGGFPMGA 199
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 310 NKRGSYRGHGYFSG*PAHVQEEG 242
++RG RGHG+ G HVQE G
Sbjct: 133 HRRGRGRGHGHGRGRGGHVQEAG 155
>At3g59700.1 68416.m06661 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 661
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 251 LDVGWSPAEIPVPPVTPAFVGNLKLVP 331
L+V PAEIPVPP+ P N L P
Sbjct: 197 LNVTLFPAEIPVPPLKPLLSLNRDLSP 223
>At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 227 QVVITPLLLDVGWSPAEIPVPPVTP--AFVGNLKLVPKPQALLQGLHKH 367
Q VI L+ G SP+ IPV T G L + PK +A + G K+
Sbjct: 123 QRVIKNYLVQAGHSPSSIPVEEWTAKGKLRGRLHIGPKHEAFMLGTPKN 171
>At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 227 QVVITPLLLDVGWSPAEIPVPPVTP--AFVGNLKLVPKPQALLQGLHKH 367
Q VI L+ G SP+ IPV T G L + PK +A + G K+
Sbjct: 123 QRVIKNYLVQAGHSPSSIPVEEWTAKGKLRGRLHIGPKHEAFMLGTPKN 171
>At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 227 QVVITPLLLDVGWSPAEIPVPPVTP--AFVGNLKLVPKPQALLQGLHKH 367
Q VI L+ G SP+ IPV T G L + PK +A + G K+
Sbjct: 123 QRVIKNYLVQAGHSPSSIPVEEWTAKGKLRGRLHIGPKHEAFMLGTPKN 171
>At3g55850.2 68416.m06206 amidohydrolase family protein weak
similarity to SP|Q06555 Exoenzymes regulatory protein
aepA precursor {Erwinia carotovora}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 583
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 218 LTVQVVITPLLLDVGWSPAEIPVPP 292
L + V PLL D+ WS + P PP
Sbjct: 20 LLISVAYLPLLNDLYWSTLKSPTPP 44
>At3g55850.1 68416.m06205 amidohydrolase family protein weak
similarity to SP|Q06555 Exoenzymes regulatory protein
aepA precursor {Erwinia carotovora}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 576
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 218 LTVQVVITPLLLDVGWSPAEIPVPP 292
L + V PLL D+ WS + P PP
Sbjct: 13 LLISVAYLPLLNDLYWSTLKSPTPP 37
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 251 LDVGWSPAEIPVPPVTPAFVGNLKLVP 331
L+V PAEIPVPP P N L P
Sbjct: 161 LNVTLFPAEIPVPPRKPLLSLNRDLSP 187
>At1g26170.1 68414.m03194 importin beta-2 subunit family protein
similar to Importin9 isoform 1 [Mus musculus]
GI:15186756; contains Pfam profile PF03810:
Importin-beta N-terminal domain
Length = 931
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 149 TDRTLVLVYRDGGDAPRSRARHSLTVQVVITPLLLDV 259
TD TLVLV A ++ S +++ +I+P++L+V
Sbjct: 534 TDETLVLVLETLQQAIKAGHEASASIESIISPVILNV 570
>At5g37880.1 68418.m04564 hypothetical protein predicted protein,
Arabidopsis thaliana
Length = 154
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +1
Query: 118 CWCGGATRRTNRQDVSSGLSRWWRCPEVAS 207
CWCG + S+ R++RC A+
Sbjct: 27 CWCGATISALMSKSASNPYRRYYRCAYAAT 56
>At4g03230.1 68417.m00442 S-locus lectin protein kinase family
protein contains Pfam domins, PF00069: Protein kinase
domain, PF00954: S-locus glycoprotein family and
PF01453: Lectin (probable mannose binding)
Length = 852
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 158 SCLFVLRVAPPHQHGAWPRPVHVCDSDADIGRVV 57
S +F+ R + G+ PR VH+CDS+ I ++
Sbjct: 469 SYVFLQRRKVNKELGSIPRGVHLCDSERHIKELI 502
>At3g02130.1 68416.m00180 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profile: Eukaryotic
protein kinase domain
Length = 985
Score = 26.2 bits (55), Expect = 9.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 104 GARRH---VGVVGRHAGQTDRTLVLVYRDGGDAPRSRARHSLTVQVVITPLLLDV 259
G RH V ++G HA +T+ LV Y GG+ + S V+ + LD+
Sbjct: 757 GRLRHPNLVTLIGYHASETEMFLVYNYLPGGNLEKFIQERSTRDWRVLHKIALDI 811
>At1g45249.2 68414.m05192 ABA-responsive element-binding protein 1
(AREB1) identical to ABA-responsive element binding
protein 1 (AREB1) [Arabidopsis thaliana] GI:9967417
Length = 416
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -1
Query: 336 GFGTNFRFPTNAGVTGGTGISAGDQPTSRRRGVMTTCTVKLCLARDLGASPP 181
G+GT + G+ GG + GDQ + G + + + A +GA P
Sbjct: 243 GYGTQMGQLNSPGIRGGGLVGLGDQSLTNNVGFVQGASAAIPGALGVGAVSP 294
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,706,473
Number of Sequences: 28952
Number of extensions: 247050
Number of successful extensions: 726
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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