Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0633
         (513 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8; Plasm...    34   1.7  
UniRef50_Q4Y2L9 Cluster: Putative uncharacterized protein; n=1; ...    34   1.7  
UniRef50_A7QB92 Cluster: Chromosome chr4 scaffold_73, whole geno...    34   2.2  
UniRef50_Q5AHZ0 Cluster: Potential mitochondrial protein Fmp47; ...    34   2.2  
UniRef50_Q83DA1 Cluster: Conserved domain protein; n=4; Coxiella...    33   3.8  
UniRef50_A7I1X4 Cluster: General glycosylation pathway protein; ...    33   3.8  
UniRef50_A0DJ74 Cluster: Chromosome undetermined scaffold_52, wh...    33   3.8  
UniRef50_Q3SEM7 Cluster: CGMP-dependent protein kinase 15-1; n=2...    32   6.7  
UniRef50_Q4MVQ8 Cluster: Hydrolase, alpha/beta fold family, puta...    32   8.8  
UniRef50_A7T7V8 Cluster: Predicted protein; n=1; Nematostella ve...    32   8.8  

>UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8;
           Plasmodium|Rep: DNA-directed RNA polymerase - Plasmodium
           falciparum (isolate 3D7)
          Length = 1450

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 55  NNKYNVDCKQYYSTNKYLIFTKISSYNF*DISHNSY-TLKRQLLETFVVLLLCSYETRVS 231
           NNK  +D K YY   +  +  ++ S  F D+    Y TLK+Q+ +T    +  +Y +++ 
Sbjct: 575 NNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLR 634

Query: 232 NT 237
           +T
Sbjct: 635 ST 636


>UniRef50_Q4Y2L9 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 306

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 111 FHKNIKL*FLRHIS*QLHIEKAVAGDICSLIIMLLRNKGE*HAFEVSFI-SSCKLHIVLC 287
           FH  +K  F  HI  + +I K+  GDI +L I+ L      +  E+ F+  +  +  +  
Sbjct: 163 FHGKLKKHFWIHIPMKYNITKSETGDITTLTIIPLYKYYSDYIIEIQFVKQNNNMKFITS 222

Query: 288 NYRNSHASSATKQYYKN 338
              N +    T  YYKN
Sbjct: 223 IKSNENNQKNTNLYYKN 239


>UniRef50_A7QB92 Cluster: Chromosome chr4 scaffold_73, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr4 scaffold_73, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 659

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = -3

Query: 394 VGHVKCLNLYKNNNYIDCL 338
           VGH +CLN++++NNY+ C+
Sbjct: 346 VGHDECLNVFRHNNYVTCI 364


>UniRef50_Q5AHZ0 Cluster: Potential mitochondrial protein Fmp47; n=1;
            Candida albicans|Rep: Potential mitochondrial protein
            Fmp47 - Candida albicans (Yeast)
          Length = 1179

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +1

Query: 91   STNKYLIFTKISSYNF*DISHNSYTLKRQLLETFVVL--LLCS 213
            S + Y+I  +I +Y F  +S  SYTLK Q+++T  +L  LLC+
Sbjct: 963  SKDIYMISLRIFNYGFTLVSQESYTLKTQIIKTLRLLLPLLCT 1005


>UniRef50_Q83DA1 Cluster: Conserved domain protein; n=4; Coxiella
           burnetii|Rep: Conserved domain protein - Coxiella
           burnetii
          Length = 494

 Score = 33.1 bits (72), Expect = 3.8
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +1

Query: 37  HRQSLINNKYNVDCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLLETFVVLLLCSY 216
           H +SL  ++  V CK  +  N ++IF  I  +NF  I+   + L   L+  ++++ L ++
Sbjct: 259 HYKSLTFSEIMVQCKHIFHINYWIIFLAIGMWNFNSINPLQHFLMFFLIGIYILVFLVTF 318


>UniRef50_A7I1X4 Cluster: General glycosylation pathway protein;
           n=2; Campylobacter|Rep: General glycosylation pathway
           protein - Campylobacter hominis (strain ATCC BAA-381 /
           LMG 19568 / NCTC 13146 /CH001A)
          Length = 729

 Score = 33.1 bits (72), Expect = 3.8
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = -1

Query: 513 VLKLWASFVSIAVFVPLILLHSIFFGFCLQEDLMGDFKHVLVT 385
           ++ + A+ +SI +++ ++LL +I F F  + D   D KH+ +T
Sbjct: 243 MILMLAALISIPLYLKILLLIAITFAFWKKSDFFADTKHLTIT 285


>UniRef50_A0DJ74 Cluster: Chromosome undetermined scaffold_52, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_52, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1841

 Score = 33.1 bits (72), Expect = 3.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 64   YNVDCKQYYSTNKYLIFTKISSY 132
            YN +CK++ S  KY  FT ISSY
Sbjct: 999  YNFECKEFSSQLKYTFFTSISSY 1021


>UniRef50_Q3SEM7 Cluster: CGMP-dependent protein kinase 15-1; n=2;
           Paramecium tetraurelia|Rep: CGMP-dependent protein
           kinase 15-1 - Paramecium tetraurelia
          Length = 692

 Score = 32.3 bits (70), Expect = 6.7
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 49  LINNKYNVDCKQYYSTNKYLIFTK--ISSYNF*DISHNSYTLKRQLLETFVVLLLCSYET 222
           +INN +  +  QYYS  +++ F +  I   N  D  H++  L ++  +  +  ++   ET
Sbjct: 456 IINNPFVANFHQYYSDEQHIYFLQDYIKGKNLGDYLHDNGLLDKEKAQFLISQMILLLET 515

Query: 223 RVSNTRLKSPLYRPAN 270
             SN  + S  ++P N
Sbjct: 516 -FSNLSIISREFKPNN 530


>UniRef50_Q4MVQ8 Cluster: Hydrolase, alpha/beta fold family,
           putative; n=9; Bacillus|Rep: Hydrolase, alpha/beta fold
           family, putative - Bacillus cereus G9241
          Length = 321

 Score = 31.9 bits (69), Expect = 8.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 148 SHNSYTLKRQLLETFVVLLLCSYETR-VSNTRLKSPLYRPANCTSYF 285
           +H  +   +QL+E     LL S E + +S  R K  LY+P N  SYF
Sbjct: 176 AHPKFHYMQQLIENLKNPLLTSEERKELSTKRTKLSLYKPENYNSYF 222


>UniRef50_A7T7V8 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 186

 Score = 31.9 bits (69), Expect = 8.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 389 TNTCLKSPIKSSCKQKPKKMLCNKISGTKTAMET 490
           +N C K P  + C +KP   LCNK  G+    +T
Sbjct: 32  SNLCNKKPGSNLCNKKPGSNLCNKTPGSNLCNKT 65


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,473,979
Number of Sequences: 1657284
Number of extensions: 7826240
Number of successful extensions: 19149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19136
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)