Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0633
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   1.7  
SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_50070| Best HMM Match : C2 (HMM E-Value=0.0025)                     27   9.1  
SB_50454| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 145 ISHNSYTLKRQLLETFVV-LLLCSYETRVSNTRLKSPLYRPANCTS 279
           +SH+   L++ LL  +   + +   ET+V  T+L++P+YR + CT+
Sbjct: 217 MSHHEAKLQKVLLTVYTKKITIADMETKV--TKLEAPIYRVSYCTA 260


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 237 AFEVSFISSCKLHIVLCNYRNSHA-SSATKQYYKNKQSI 350
           AF VSF+ +C   +V+C+ RN  + SS  +  Y +++ +
Sbjct: 699 AFAVSFLVNCIFLVVVCSLRNGQSRSSCNENSYPDEEPL 737


>SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 406 FQACVGHVKCLNLYKNNNYIDCLF 335
           F  C  +V C NL++N NYI C F
Sbjct: 637 FHTC--NVFCANLFRNTNYIACTF 658


>SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
 Frame = +1

Query: 55  NNKYNVDCKQYYSTNKYLIFTKISSYN---F*DISHNSYTLKRQLLETFVV-LLLCSYET 222
           NN Y +D K   S N Y I  K +S N       S+N+YT      + F       + ET
Sbjct: 75  NNNYTIDNKDNSSNNNYTINNKNNSRNNNYTISTSNNNYTTNYNKSKNFTTRTKTTTSET 134

Query: 223 RVSNTRLKSPLYRPA---NCTS 279
             + +  K+     A   NCTS
Sbjct: 135 TTTPSTTKNNRNNTATSNNCTS 156


>SB_50070| Best HMM Match : C2 (HMM E-Value=0.0025)
          Length = 111

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 250 ETSNACYSPLFRKSIIIRLQMSPATAFSMCNCYE 149
           +   + + P F ++   +L+ +PA  F+ C C+E
Sbjct: 78  QAKKSTHRPTFNQTFTFKLRGAPADLFNDCVCFE 111


>SB_50454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 429 NKNRKKCYAIKLAEQKLQWKQNWPI 503
           NK ++K + +K+  ++  WK N+P+
Sbjct: 23  NKVKRKHFNLKIVAEQFYWKSNFPL 47


>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1570

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 277  MCNLQDDIKET-SNACYSPLFRKSIIIRLQMSPATAFSMCNCYEICLRNYS 128
            +CN+ D I     +   S LF  SI      +P T    C CY+ C++ ++
Sbjct: 907  LCNVDDYISNFFPSDLESQLFSNSITNLSLSNPLTVALYCLCYQECVKAHT 957


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,457,269
Number of Sequences: 59808
Number of extensions: 261653
Number of successful extensions: 605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)