Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0633
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01930.1 68417.m00257 DC1 domain-containing protein contains ...    27   7.4  
At1g30360.1 68414.m03712 early-responsive to dehydration stress ...    27   9.8  

>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 388 HVKCLNLYKNNNYIDC 341
           H   LNLYK  NYIDC
Sbjct: 121 HHHKLNLYKKPNYIDC 136


>At1g30360.1 68414.m03712 early-responsive to dehydration stress
           protein (ERD4) nearly identical to ERD4 protein
           (early-responsive to dehydration stress) [Arabidopsis
           thaliana] GI:15375406; contains Pfam profile PF02714:
           Domain of unknown function DUF221
          Length = 724

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 495 SFVSIAVFVPLILLHSIFFGFCLQEDLMGDFKHVLVTLS 379
           +F   A+ +PLI+  S+ FG+  ++   G F+H  + ++
Sbjct: 639 TFFYTALVIPLIIT-SLIFGYVCRQKFYGGFEHTALEVA 676


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,984,490
Number of Sequences: 28952
Number of extensions: 180053
Number of successful extensions: 407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)