Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0632
(443 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 73 2e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 49 4e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 48 9e-07
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 36 0.003
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 33 0.015
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 30 0.14
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.3
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.0
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 5.2
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S... 25 6.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 72.9 bits (171), Expect = 2e-14
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GP IV+RKCF
Sbjct: 339 VWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
Score = 26.6 bits (56), Expect = 1.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MK+KI+ PERKYS
Sbjct: 324 SMKVKIVAPPERKYS 338
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 48.8 bits (111), Expect = 4e-07
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFG 313
VW GGSILASL FQ +W+ KQEYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 47.6 bits (108), Expect = 9e-07
Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 3/38 (7%)
Frame = -3
Query: 393 WIGGSILASLFTFQQMWILKQEYDEFGP---SIVHRKC 289
W+GGSIL+SL TF Q+WI +QEY+E G +++ ++C
Sbjct: 395 WLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 35.9 bits (79), Expect = 0.003
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = -3
Query: 393 WIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
W+GGSILASL TF+++ I +EY +++ R+ F
Sbjct: 345 WLGGSILASLSTFRRLLITSEEYKN-DQNVIFRRRF 379
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 33.5 bits (73), Expect = 0.015
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHR 295
VW GGS+LA F K +Y+E+G SI R
Sbjct: 386 VWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 30.3 bits (65), Expect = 0.14
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQ-MWILKQEYDEFG 313
V+IGG++LA + MW+ K E++E+G
Sbjct: 350 VFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -3
Query: 399 LVWIGGSILASLFTFQQM---WILKQEYDEFGPSIVHRK 292
L ++GGSI+A + + ++ +EY + GP+ +H K
Sbjct: 484 LAFLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 335 NRSMMSLALPLYTGSVFKRTACRCLQQPRPVAQFRLVISVNLIVRKI 195
NRS SL+ Y+ + K+T+ L + R Q +++ I+R++
Sbjct: 241 NRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRV 287
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VW G ++ L++ +W++ E+ GP + R +
Sbjct: 588 VWGGAFLVYILYSLAHVWVVAYEFVPGGPILRERTSY 624
>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 207
Score = 24.6 bits (51), Expect = 6.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 375 LASLFTFQQMWILKQEYDEFGPSIVHRKCF*THRVSLPP 259
LA F++ LK+ +D P R+C T + LPP
Sbjct: 67 LAEGMVFEKETTLKKVFDVLVPRYNGRRCGYTRLLKLPP 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,204
Number of Sequences: 5004
Number of extensions: 30532
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -