Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0632
(443 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 7e-15
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 7e-15
SB_56| Best HMM Match : Actin (HMM E-Value=0) 77 7e-15
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 77 7e-15
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 73 8e-14
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 38 0.003
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 28 3.0
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 27 5.3
SB_59607| Best HMM Match : UPF0258 (HMM E-Value=6.6) 27 7.0
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 77.0 bits (181), Expect = 7e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 325 TMKIKIIAPPERKYS 339
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 77.0 bits (181), Expect = 7e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 324 TMKIKIIAPPERKYS 338
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 77.0 bits (181), Expect = 7e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 324 TMKIKIIAPPERKYS 338
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 77.0 bits (181), Expect = 7e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 325 TMKIKIIAPPERKYS 339
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GP+IVHRKCF
Sbjct: 302 VWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 287 TMKIKIIAPPERKYS 301
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GP+IVHRKCF
Sbjct: 313 VWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 298 TMKIKIIAPPERKYS 312
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 73.3 bits (172), Expect = 8e-14
Identities = 31/37 (83%), Positives = 33/37 (89%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI K+EY E+GP IVHRKCF
Sbjct: 113 VWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MK+K+I PERKYS
Sbjct: 98 SMKVKVIAPPERKYS 112
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF*THR 274
VW GGS+LAS F + K +YDE GPSI F HR
Sbjct: 304 VWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 240 SNRPRLLEAATRGAFKNTSCVQWKGQTHHTPVSRSTSVGR 359
SNR E A RG N S ++ K Q +HT + V R
Sbjct: 1135 SNRGNGREGAHRGGLNNVSGLRGKEQNNHTKAGANAGVRR 1174
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 359 PSNRCGS*NRSMMSLALPLYTGSVFKRTACRCLQQPRPVAQ 237
P N+ G+ R + +L P++TGS + R +P P A+
Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSAR 919
>SB_59607| Best HMM Match : UPF0258 (HMM E-Value=6.6)
Length = 159
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 353 NRCGS*NRSMMSLALPLYTGSVFKRTAC 270
+RCG M LPLY + KR AC
Sbjct: 92 DRCGGGYLGWMDGTLPLYAHGIVKRIAC 119
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,807,327
Number of Sequences: 59808
Number of extensions: 245861
Number of successful extensions: 489
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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