Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0632
(443 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 77 6e-15
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 77 6e-15
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 77 6e-15
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 77 6e-15
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 77 6e-15
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 77 6e-15
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 77 6e-15
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 77 6e-15
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 77 6e-15
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 77 6e-15
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 77 6e-15
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 60 5e-10
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 55 3e-08
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 36 0.010
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 31 0.50
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical... 27 8.1
AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 324 TMKIKIIAPPERKYS 338
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 325 TMKIKIIAPPERKYS 339
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 325 TMKIKIIAPPERKYS 339
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 325 TMKIKIIAPPERKYS 339
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 325 TMKIKIIAPPERKYS 339
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 324 TMKIKIIAPPERKYS 338
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 325 TMKIKIIAPPERKYS 339
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 325 TMKIKIIAPPERKYS 339
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 296 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 332
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 281 TMKIKIIAPPERKYS 295
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 326 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 362
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 311 TMKIKIIAPPERKYS 325
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI KQEYDE GPSIVHRKCF
Sbjct: 340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
TMKIKII PERKYS
Sbjct: 325 TMKIKIIAPPERKYS 339
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 60.5 bits (140), Expect = 5e-10
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = -3
Query: 393 WIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKC 289
WIGGSIL SL TFQQMW+ K EYDE G SIV +KC
Sbjct: 401 WIGGSILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 54.8 bits (126), Expect = 3e-08
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = -3
Query: 435 RLRSLFFQRGSILVWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
++R Q + L WIGGSI+ASL TF++MW+ K+EY++ G S +H++ F
Sbjct: 325 KIRISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 36.3 bits (80), Expect = 0.010
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSI 304
VW GGS+LAS F Q+ K EY E GPSI
Sbjct: 384 VWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 30.7 bits (66), Expect = 0.50
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = -3
Query: 399 LVWIGGSILASLFTF--QQMWILKQEYDEFG 313
+V++GG++LA+L Q W+ K+EY+E G
Sbjct: 353 MVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
protein Y51A2D.15 protein.
Length = 1222
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -1
Query: 419 SSREEVFWYGLVDRSSPPFLPSNRCG-S*NRSMMSLALPLYTGSVF-KRTACRCLQQPRP 246
S+ E+ Y +RSSPP ++ C S + PL+ F K +A + P P
Sbjct: 1123 STTEDSSVYSADERSSPPLAGNSTCSVSTSSDSTPDECPLHGSRSFSKISALKIQSSPSP 1182
Query: 245 VAQFRLVISVNLIVRKILL 189
+ F +S+ + LL
Sbjct: 1183 SSSFSRFLSLRRTAKPSLL 1201
>AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical
protein Y73B3A.1 protein.
Length = 659
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 58 IRFSTYNHHS*DYKKSFGECSTGPAV 135
I F YN S K+ GECST PAV
Sbjct: 516 IAFVEYNSRS-SRKRKAGECSTPPAV 540
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,494,826
Number of Sequences: 27780
Number of extensions: 177588
Number of successful extensions: 364
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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