Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0632
         (443 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              42   3e-06
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.1  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 41.9 bits (94), Expect = 3e-06
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = -3

Query: 396 VWIGGSILASLFTFQQMWI 340
           VWIGGSILASL TFQQMWI
Sbjct: 114 VWIGGSILASLSTFQQMWI 132



 Score = 27.9 bits (59), Expect = 0.053
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -2

Query: 442 TMKIKIIVLPERKYS 398
           TMKIKII  PE+KYS
Sbjct: 99  TMKIKIIAPPEKKYS 113


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 225 YKPELSNRPRLLEAATRGA 281
           Y+    N+P++L A  RGA
Sbjct: 430 YRGPKQNKPKVLHAIRRGA 448


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 388 WWIDPRLPFYLPTDVD 341
           +W DPRL F   T V+
Sbjct: 66  FWTDPRLAFKKRTGVE 81


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 388 WWIDPRLPFYLPTDVD 341
           +W DPRL F   T V+
Sbjct: 66  FWTDPRLAFKKRTGVE 81


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 388 WWIDPRLPFYLPTDVD 341
           +W DPRL F   T V+
Sbjct: 5   FWTDPRLAFKKRTGVE 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,375
Number of Sequences: 438
Number of extensions: 2437
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)