Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0632
(443 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 75 2e-14
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 75 2e-14
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 75 2e-14
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 75 2e-14
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 75 2e-14
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 75 2e-14
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 73 9e-14
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 73 9e-14
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 67 6e-12
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 65 2e-11
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 63 9e-11
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 59 2e-09
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 52 2e-07
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 38 0.003
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 35 0.028
At2g26340.1 68415.m03160 expressed protein 35 0.028
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 34 0.050
At5g22530.1 68418.m02629 expressed protein 28 2.5
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi... 27 5.7
At1g55230.1 68414.m06308 hypothetical protein contains Pfam prof... 27 7.5
At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3... 26 10.0
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 74.9 bits (176), Expect = 2e-14
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI K EYDE GPSIVHRKCF
Sbjct: 341 VWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MKIK++ PERKYS
Sbjct: 326 SMKIKVVAPPERKYS 340
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 74.9 bits (176), Expect = 2e-14
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI K EYDE GPSIVHRKCF
Sbjct: 341 VWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MKIK++ PERKYS
Sbjct: 326 SMKIKVVAPPERKYS 340
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 74.9 bits (176), Expect = 2e-14
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI K EYDE GPSIVHRKCF
Sbjct: 341 VWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MKIK++ PERKYS
Sbjct: 326 SMKIKVVAPPERKYS 340
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 74.9 bits (176), Expect = 2e-14
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI K EYDE GPSIVHRKCF
Sbjct: 341 VWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MKIK++ PERKYS
Sbjct: 326 SMKIKVVAPPERKYS 340
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 74.9 bits (176), Expect = 2e-14
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI K EYDE GPSIVHRKCF
Sbjct: 341 VWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MKIK++ PERKYS
Sbjct: 326 SMKIKVVAPPERKYS 340
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 74.9 bits (176), Expect = 2e-14
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI K EYDE GPSIVHRKCF
Sbjct: 341 VWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MKIK++ PERKYS
Sbjct: 326 SMKIKVVAPPERKYS 340
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 72.9 bits (171), Expect = 9e-14
Identities = 32/37 (86%), Positives = 32/37 (86%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI K EYDE GP IVHRKCF
Sbjct: 341 VWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MKIK++ PERKYS
Sbjct: 326 SMKIKVVAPPERKYS 340
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 72.9 bits (171), Expect = 9e-14
Identities = 32/37 (86%), Positives = 32/37 (86%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL TFQQMWI K EYDE GP IVHRKCF
Sbjct: 341 VWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MKIK++ PERKYS
Sbjct: 326 SMKIKVVAPPERKYS 340
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 66.9 bits (156), Expect = 6e-12
Identities = 28/37 (75%), Positives = 32/37 (86%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VWIGGSILASL T++QMWI K EY+E GP+IVH KCF
Sbjct: 293 VWIGGSILASLSTYEQMWITKAEYEENGPAIVHTKCF 329
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKC 289
VWIGGSILASL TF QMWI K EY+E G +IVHRKC
Sbjct: 330 VWIGGSILASLSTFHQMWITKDEYEEHGAAIVHRKC 365
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 62.9 bits (146), Expect = 9e-11
Identities = 27/37 (72%), Positives = 30/37 (81%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VW+GGSILASL +F MWI K EYDE G +IVHRKCF
Sbjct: 342 VWVGGSILASLSSFAPMWITKAEYDEQGGAIVHRKCF 378
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MKIK++ PERKYS
Sbjct: 327 SMKIKVVAPPERKYS 341
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 58.8 bits (136), Expect = 2e-09
Identities = 25/36 (69%), Positives = 28/36 (77%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKC 289
VWIGGSILASL +FQQMW K EY+E G S + RKC
Sbjct: 405 VWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKC 440
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 52.0 bits (119), Expect = 2e-07
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = -3
Query: 408 GSILVWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
G W+GG+ILA + Q + K +YDE GPS+VHRKCF
Sbjct: 323 GMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVHRKCF 363
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
VW GGS+LAS F+ M + K EY+E G + R+ F
Sbjct: 384 VWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRFF 420
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 34.7 bits (76), Expect = 0.028
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWI 340
VWIGGSILASL TFQQ+ I
Sbjct: 341 VWIGGSILASLSTFQQVKI 359
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 442 TMKIKIIVLPERKYS 398
+MKIK++ PERKYS
Sbjct: 326 SMKIKVVAPPERKYS 340
>At2g26340.1 68415.m03160 expressed protein
Length = 230
Score = 34.7 bits (76), Expect = 0.028
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -1
Query: 320 SLALPLYTGSVFKRTACRCLQQPRPVAQFRLVISVNLIVRKILL 189
+++LPL++ S K+ C P P Q R VISV+ + ++LL
Sbjct: 7 TVSLPLFSNSNHKKLTCAATLSPPPWKQSRRVISVSFFLSRLLL 50
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 33.9 bits (74), Expect = 0.050
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 396 VWIGGSILASLFTFQQMWILKQEYDEFGPSI 304
VW GGS+L+S F K+EY+E+G SI
Sbjct: 386 VWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At5g22530.1 68418.m02629 expressed protein
Length = 139
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 329 SCFKIHICWKVKREARIDPPIHTRILP 409
SCFK+ +C+K K+ + P+ T ILP
Sbjct: 7 SCFKV-MCFKKKQSKKEAKPVKTEILP 32
>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 747
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +3
Query: 261 EAATRGAFKNTSCVQWKGQT-----HHTPVSRSTSVG 356
E +RG F + + WKGQ +HT +R T VG
Sbjct: 615 EVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVG 651
>At1g55230.1 68414.m06308 hypothetical protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 300
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 378 ILASLFTFQQMWILKQEYDEFGPSIVHRKCF 286
+ +S TFQ +W + Y + PS++ + CF
Sbjct: 183 VRSSSITFQGVWFVVMGYMLWTPSLIPKGCF 213
>At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3.6)
plant glutamate receptor family, PMID:11379626
Length = 903
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 432 LRSLFFQRGSILVWIGGSILASLFTFQQMWILKQEYDEF 316
++ F QR L +G S A L+ + +W+L Q D+F
Sbjct: 290 MKQNFVQRWHNLTHVGLSTYA-LYAYDTVWLLAQAIDDF 327
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,874,498
Number of Sequences: 28952
Number of extensions: 163859
Number of successful extensions: 380
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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