Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0630
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    28   0.85 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   4.5  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    25   6.0  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   7.9  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   7.9  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    25   7.9  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.9  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 275 FKRMLEKWLCSFFTYTGTGWKCSNLID 195
           F + L K +   FTY+G G KC  ++D
Sbjct: 139 FSKGLMKSMTHLFTYSGMGAKCKKVLD 165


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 376 PYNESYYNSLAVILQHHDWKNPDITQ 453
           PY++     ++ +LQ + W+ P+I Q
Sbjct: 273 PYSDRLKRLISTLLQQYPWQRPNIYQ 298


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 177 TRQISPVDQVRTLPPRSCVREEGAQPLLKHP-LEKGKSEQN 296
           T+Q+S  +++  L  +  + EE A+ + +HP L K ++E+N
Sbjct: 422 TKQVSNKERLEILREQEELIEEEAEHVAEHPDLAKKQTEEN 462


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 109 VEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHF-HPVPVYVKKEHSHFSSI 267
           ++  +D QSL+GE  +  + + E  KS  S +F  F +   V+V   H+ F ++
Sbjct: 431 LDLSFDFQSLMGEFENLIKQQEEAKKSLWSKRFSRFYYGHYVFVNTCHNFFLTL 484


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 362 RYPIHPIMSHITIHWPSFYNIMTGKTLT 445
           RY +  +     + W   Y  +TG TLT
Sbjct: 344 RYQLETVYRKTLLEWEDLYKRLTGVTLT 371


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 341 STAVLVFSLRMNQLEVLL*FSLFKRMLEKWLCSFFTYTGTGWKCS 207
           S  V +F L +  +  L   SLF+R+   W C+   +      CS
Sbjct: 419 SAGVKIFQLLLGAIFPLFAESLFRRLNYGWGCTLLAFILLACGCS 463


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 341 STAVLVFSLRMNQLEVLL*FSLFKRMLEKWLCSFFTYTGTGWKCS 207
           S  V +F L +  +  L   SLF+R+   W C+   +      CS
Sbjct: 419 SAGVKIFQLLLGAIFPLFAESLFRRLNYGWGCTLLAFILLACGCS 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,288
Number of Sequences: 5004
Number of extensions: 44885
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)