Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0630
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1083 - 23840789-23841634,23841991-23842017,23844401-238444... 34 0.069
08_02_0707 - 20212190-20214592 30 1.1
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 29 1.5
09_02_0036 + 3217163-3217584,3217752-3218322 29 1.5
12_01_0426 - 3356350-3356745,3357604-3357921 29 2.0
06_03_1321 + 29308538-29308588,29308728-29308827,29308939-293091... 29 2.6
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 29 2.6
10_08_0500 - 18357828-18358649 28 3.4
08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846... 28 3.4
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 28 3.4
11_01_0404 + 3071412-3071464,3073572-3074970 28 4.5
09_06_0005 - 20135073-20135249,20136047-20136824,20137794-201378... 28 4.5
07_03_1629 - 28246440-28247339 27 6.0
07_03_0948 - 22821069-22822067 27 6.0
06_03_0775 - 24510624-24510655,24511228-24512179 27 7.9
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 27 7.9
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 27 7.9
03_05_0301 + 22928864-22929787 27 7.9
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 27 7.9
>07_03_1083 -
23840789-23841634,23841991-23842017,23844401-23844442,
23844882-23845002,23845824-23846062
Length = 424
Score = 33.9 bits (74), Expect = 0.069
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 1 VRYNSNLATKMKYHIFLGLIAAVTAFPGIIHDEAPQVEAKYDHQSLIGESGHHH 162
V YN N TK+ +H+F+ L+ P +A VE + H S++ GHHH
Sbjct: 157 VCYNVN-CTKLSHHLFMHLVQN-PRLPLRFVVQAMLVEQLHSHHSMLLSGGHHH 208
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 91 HDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFH 219
H+ + K +H G HHH H+H++ HQ +H H
Sbjct: 565 HNSLTENSCKENHSHCHGHDHHHHH-HHDHSEHHQQ-SGDHAH 605
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 118 KYDHQSLIGESGHHHQIEHEHAKSHQS 198
K+ H LI E G+ Q+E++H K+ QS
Sbjct: 159 KHHHIQLIKEKGNFSQLENDHEKASQS 185
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 392 ITIHWPSFYNIM-TGKTLTLPNLITLQH 472
I+ W F N++ +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>12_01_0426 - 3356350-3356745,3357604-3357921
Length = 237
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 382 NESYYNSLAVILQHHDWKN 438
+ESYY V +QH DW N
Sbjct: 203 SESYYFKFGVYMQHRDWSN 221
>06_03_1321 +
29308538-29308588,29308728-29308827,29308939-29309156,
29309251-29310591
Length = 569
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 278 LFKRMLEKWLCSFFTYTGTGWKCSNLID 195
+F RML W C F YTGT S ++
Sbjct: 338 IFVRMLPLWACITFFYTGTAQVNSTFVE 365
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -2
Query: 221 GWKCSNLIDW*DLACSCSI**WCPDSPIKDWWSYFASTWGASSCIIPGKAVTAAMSPRKI 42
G CS LI + CS S +C D P+++ + +W S+ P VT ++ +KI
Sbjct: 310 GIACSFLIKCKNSTCSRSFHTFCLDPPLQEIIGTWECSWCKSNA-APAVKVTEVLTSKKI 368
Query: 41 WYFILVARLL 12
+ R+L
Sbjct: 369 QRLVGHRRIL 378
>10_08_0500 - 18357828-18358649
Length = 273
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -3
Query: 358 PPLRTSPPPCLCSVSG*ISLRFCSDFPFSRGCLRSGCAPSSRTQERGGSVR 206
PPL PPP C G + +FC +SR R C R GG++R
Sbjct: 96 PPL-PRPPPRQCPRCGSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLR 145
>08_02_1543 +
27783063-27783182,27784321-27784485,27784577-27784686,
27784771-27784876,27784952-27785050,27785450-27786607
Length = 585
Score = 28.3 bits (60), Expect = 3.4
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +1
Query: 85 IIHDEAPQVE--AKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPV--YVKKEHS 252
+I D P V A+ D ++ + G+H ++ ++A S F H H + + Y K E+S
Sbjct: 132 MILDNLPLVVPIARPDRDDVVFQGGYHVGVKGQYAGSKDEKYFIHNHLIFLVKYHKDENS 191
Query: 253 HFSSILLKRENQSKTSS 303
S I+ E+ K +S
Sbjct: 192 DLSRIVGFEESDIKWAS 208
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 106 QVEAKYDHQSLIGESGHHHQIEHEHAKSHQ 195
++E + + Q +G H H EHEH ++HQ
Sbjct: 290 EIELEEEEQRQLGHHHHQHHHEHEH-ENHQ 318
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 142 GESGHHHQIEHEHAKSHQSIKFEH 213
G+ HHH H+K+H S + EH
Sbjct: 118 GKIAHHHHHHRHHSKNHGSDEEEH 141
>09_06_0005 -
20135073-20135249,20136047-20136824,20137794-20137854,
20138253-20138523
Length = 428
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 316 RLNTSTAVDLSSRGGP-VPNSP-YNESYYNSLAVILQHHDWKNP 441
RL S++V+ GP + N+ Y +N +++L+H WK+P
Sbjct: 192 RLQFSSSVNFVQYRGPELFNAEFYQNDMFNIASILLEHFRWKHP 235
>07_03_1629 - 28246440-28247339
Length = 299
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Frame = +1
Query: 139 IGESGHHHQIEHEH----AKSHQSIKFEHFHPVPVYVKKEHSHFSSILL 273
IG GHHH H H A S+ PV V V S SS LL
Sbjct: 137 IGSYGHHHHHHHHHGHGAASGASSVGECSTMPVMVPVDPHRSSMSSSLL 185
>07_03_0948 - 22821069-22822067
Length = 332
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -3
Query: 298 RFCSDFPFSRGCLRSGCAPSSRTQERGGS 212
R C P G +R GC P Q GG+
Sbjct: 296 RLCGPLPRLHGVIRHGCKPYEHNQCAGGA 324
>06_03_0775 - 24510624-24510655,24511228-24512179
Length = 327
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 406 PVNCNMTHYRVNWVPGPPLRTSPPPCLCSVSG*ISLRFCSD 284
P + HY V +PG P + PPP + FC D
Sbjct: 163 PAAASPPHYEVFLIPGLPEKPPPPPPKQKAKAITAPPFCLD 203
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 171 ARTRQISPVDQVRTLPPRSCVREEGAQPLLKHPLEKGKSEQNLKLIHPET 320
+ + Q +P + RT+PP REE + +++ +E +N ++ ET
Sbjct: 1455 SESNQTAPKESERTIPPEHEDREEEKEENMENKIEISIGRENDEVSEQET 1504
>03_05_0488 - 24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 117 RFDLGSFIMYYSRKSSHCGNESQEDMVLHLGR*ITVVP 4
RF G I +S +++CG + +L LGR + VVP
Sbjct: 891 RFAQGHLITLFSA-TNYCGTANNAGAILVLGRDLVVVP 927
>03_05_0301 + 22928864-22929787
Length = 307
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 73 AFPGIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEH 180
A P + PQ + + H + + HHH H H
Sbjct: 257 ALPYHMEPSPPQPSSGHSHDEVSQQQHHHHHHRHHH 292
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 37 YHIFLGLIAAVTAFPGIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEH 180
+H F L +++ P II + + A + H G SGHHH I+ EH
Sbjct: 166 WHAFDVLQGVMSSAPDIIGNVS---HAHHSH----GSSGHHHGIDLEH 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,124
Number of Sequences: 37544
Number of extensions: 332621
Number of successful extensions: 1131
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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