Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0628
         (450 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   2.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   4.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   4.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.1  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 356 STDPYGVLPLWRSNDLN 406
           + DPYG++  W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 336 LPSNRCGSRNRSTTSLAPPLYTG 268
           LP++RC SR  S + + P   +G
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSG 101


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 225 AGCWRQRRAVV*KHFLCTMEGP 290
           A CW Q +AV+ +  L   + P
Sbjct: 391 ASCWAQFKAVLWRSILAVFKEP 412


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 225 AGCWRQRRAVV*KHFLCTMEGP 290
           A CW Q +AV+ +  L   + P
Sbjct: 391 ASCWAQFKAVLWRSILAVFKEP 412


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -2

Query: 359 WIDPRLPLYLPTDVDLETGVRRVWPLHCTQEVLLNHRASLPPAAR 225
           W  P  P+Y      ++          CT+  L N+RAS  P  R
Sbjct: 235 WFLPHQPIYPAVTATVQLST-------CTRTTLKNNRASPYPMQR 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,301
Number of Sequences: 336
Number of extensions: 1876
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)