Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0628
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 124 8e-30
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 60 1e-10
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 56 3e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 3e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 42 4e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 31 0.11
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.76
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 3.1
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 4.1
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 5.4
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 7.1
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 7.1
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 24 9.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 124 bits (298), Expect = 8e-30
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = -3
Query: 448 MQKEITALAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 269
MQKEI ALAP +MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+R
Sbjct: 313 MQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYR 372
Query: 268 KCF 260
KCF
Sbjct: 373 KCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 60.5 bits (140), Expect = 1e-10
Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 6/68 (8%)
Frame = -3
Query: 448 MQKEITALAPWTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP-- 284
+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G
Sbjct: 366 LQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDR 424
Query: 283 -SIVHRKC 263
+++ ++C
Sbjct: 425 LALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 56.0 bits (129), Expect = 3e-09
Identities = 25/60 (41%), Positives = 44/60 (73%)
Frame = -3
Query: 439 EITALAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 260
E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 321 ELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 3e-08
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -3
Query: 373 SVWIGGSILASLSTFQQMWISKQEYDESG 287
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 41.9 bits (94), Expect = 4e-05
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 409 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 287
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 406 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 269
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 30.7 bits (66), Expect = 0.11
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = -3
Query: 448 MQKEITALAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 275
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.76
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 367 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 266
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 375 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 280
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -3
Query: 406 IKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 266
I +I PP + ++ W G I + ++WI ++ G ++ K
Sbjct: 563 ISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 308 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 394
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 340 LSTFQQMWISKQEYDESGPSIV 275
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 24.6 bits (51), Expect = 7.1
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = -2
Query: 371 RMDRWIDPRLPLYLPTDVDLETGVRRVWPLHCTQEVLLNHRASLPPAARGRLLNS 207
R W+DPR PL P G Q L+H LP RL NS
Sbjct: 330 RTTTWVDPRNPLVRPNGGSSTVG-------SLMQPQSLSHLGPLPSGWEMRLTNS 377
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 368 MDRWIDPRLPLYLPTDVDLETGVR 297
+D W+ +L YL T + ETGV+
Sbjct: 188 VDNWLQDKLKHYLTTCLCRETGVQ 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,658
Number of Sequences: 5004
Number of extensions: 29770
Number of successful extensions: 90
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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