Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0628
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 3e-31
SB_56| Best HMM Match : Actin (HMM E-Value=0) 131 3e-31
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 4e-31
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 130 4e-31
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 7e-31
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 9e-31
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 113 8e-26
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 48 5e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 36 0.015
SB_27191| Best HMM Match : Lysis_S (HMM E-Value=5.6) 27 7.2
SB_39925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07) 27 9.5
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 131 bits (316), Expect = 3e-31
Identities = 61/63 (96%), Positives = 62/63 (98%)
Frame = -3
Query: 448 MQKEITALAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 269
MQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 373
Query: 268 KCF 260
KCF
Sbjct: 374 KCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 131 bits (316), Expect = 3e-31
Identities = 61/63 (96%), Positives = 62/63 (98%)
Frame = -3
Query: 448 MQKEITALAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 269
MQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 313 MQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 372
Query: 268 KCF 260
KCF
Sbjct: 373 KCF 375
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 130 bits (315), Expect = 4e-31
Identities = 61/63 (96%), Positives = 62/63 (98%)
Frame = -3
Query: 448 MQKEITALAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 269
MQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 313 MQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 372
Query: 268 KCF 260
KCF
Sbjct: 373 KCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 130 bits (315), Expect = 4e-31
Identities = 61/63 (96%), Positives = 62/63 (98%)
Frame = -3
Query: 448 MQKEITALAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 269
MQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 373
Query: 268 KCF 260
KCF
Sbjct: 374 KCF 376
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 130 bits (313), Expect = 7e-31
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = -3
Query: 448 MQKEITALAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 269
MQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHR
Sbjct: 287 MQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHR 346
Query: 268 KCF 260
KCF
Sbjct: 347 KCF 349
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 129 bits (312), Expect = 9e-31
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = -3
Query: 448 MQKEITALAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 269
MQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHR
Sbjct: 276 MQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHR 335
Query: 268 KCF 260
KCF
Sbjct: 336 KCF 338
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 113 bits (271), Expect = 8e-26
Identities = 51/63 (80%), Positives = 56/63 (88%)
Frame = -3
Query: 448 MQKEITALAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 269
MQKEI LA +MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E GP IVHR
Sbjct: 87 MQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHR 146
Query: 268 KCF 260
KCF
Sbjct: 147 KCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 47.6 bits (108), Expect = 5e-06
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = -3
Query: 427 LAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 260
+ P ++ ++I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 41.5 bits (93), Expect = 3e-04
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -3
Query: 409 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 287
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 35.9 bits (79), Expect = 0.015
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
Frame = -3
Query: 448 MQKEITALAPWTMKIKIIA---PPERKYSVWIGGSILASL 338
+ +E+ + P +M++K+I+ E++++ WIGGSILASL
Sbjct: 191 LNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_27191| Best HMM Match : Lysis_S (HMM E-Value=5.6)
Length = 181
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 403 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 272
K++ + KY + I G+ L+ F ISK EY P+I +
Sbjct: 50 KVVVIVDYKYELDIRGTKFGELTGFDPKVISKTEYGSKLPNITN 93
>SB_39925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 366 GSVDRSSPPSLPSNRCGSRNRSTTSLAP 283
G+ S+P ++P + + N STTSL+P
Sbjct: 16 GTTRPSAPATIPHSTTNTDNSSTTSLSP 43
>SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)
Length = 436
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 366 GSVDRSSPPSLPSNRCGSRNRSTTSLAP 283
G+ S+P ++P + + N STTSL+P
Sbjct: 124 GTTRPSAPATIPHSTTNTDNSSTTSLSP 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,693
Number of Sequences: 59808
Number of extensions: 252361
Number of successful extensions: 634
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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