Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0628
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              93   1e-21
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   6.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   6.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.2  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 93.5 bits (222), Expect = 1e-21
 Identities = 44/46 (95%), Positives = 45/46 (97%)
 Frame = -3

Query: 448 MQKEITALAPWTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 311
           MQKEITALAP TMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 88  MQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 331 FQQMWISKQEYDESGPSIVHRK 266
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 286 PSIVHRKCF*TTARRCLQQPAAGC 215
           P+ +  KC  TT   CL+   A C
Sbjct: 159 PAYLASKCALTTLTDCLRSELAQC 182


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 427 LAPWTMKIKIIAPP 386
           L P+T+K KI  PP
Sbjct: 454 LCPYTLKHKIRVPP 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,424
Number of Sequences: 438
Number of extensions: 2483
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)