Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0627
         (530 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q76IN5 Cluster: Reverse transcriptase; n=1; Anopheles g...    76   4e-13
UniRef50_Q1CXT2 Cluster: Putative lipoprotein; n=1; Myxococcus x...    37   0.33 
UniRef50_Q97Q93 Cluster: Conserved domain protein; n=16; Bacteri...    34   2.4  
UniRef50_A7ER70 Cluster: Predicted protein; n=1; Sclerotinia scl...    33   4.1  
UniRef50_A4TFR1 Cluster: Putative uncharacterized protein; n=1; ...    32   7.2  
UniRef50_A3EPE7 Cluster: Putative diguanylate phosphodiesterase;...    32   7.2  
UniRef50_Q7QTU1 Cluster: GLP_191_3328_5502; n=11; Giardia intest...    32   7.2  
UniRef50_Q3A8Y3 Cluster: Glycosyl transferase, group 2 family; n...    32   9.5  

>UniRef50_Q76IN5 Cluster: Reverse transcriptase; n=1; Anopheles
            gambiae|Rep: Reverse transcriptase - Anopheles gambiae
            (African malaria mosquito)
          Length = 1209

 Score = 76.2 bits (179), Expect = 4e-13
 Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
 Frame = +3

Query: 81   TFGVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLLNAKVMHNSGC 260
            +FGV++W+ T+L+AL+R +R + T H+M HPK+SV R+ +PRK GG G+++ + +  S  
Sbjct: 839  SFGVMKWSNTDLEALERTIRVVSTKHQMRHPKASVERVILPRKIGGVGIIDIQALCISQI 898

Query: 261  AISRNISYQGLTV*CT*RS-WNATKD*PH*P*PKTRWQSPAVLNTSDRK-AIWKGKELHR 434
               R+   +        R+ + A          +  +Q    + T D K A WK KELH 
Sbjct: 899  HQLRSYFVESQNRHELYRTVYKADHGLSALHLAQQDYQLNCNIKTVDGKGATWKQKELHG 958

Query: 435  HFFQALHEPHLDKKTSLHWLPFGDL 509
                 L+  H+DK +S  WL   DL
Sbjct: 959  THTHQLNLEHIDKVSSSTWLVRCDL 983


>UniRef50_Q1CXT2 Cluster: Putative lipoprotein; n=1; Myxococcus
           xanthus DK 1622|Rep: Putative lipoprotein - Myxococcus
           xanthus (strain DK 1622)
          Length = 686

 Score = 36.7 bits (81), Expect = 0.33
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 205 GSVVAGAYLTPRSCTTVGVQSQGIFPIKG*QCDAHRGHG-MRQKTDPTSPDQKPDGNHRQ 381
           GS+  G  L+P    T   Q QG +PI     DAH     ++   +   P Q PDG    
Sbjct: 163 GSLPTGIALSPEGLLTGQAQGQGTYPITLRVHDAHGAEAEVQLGLEVVGPGQTPDGGAPD 222

Query: 382 YSIPLTV 402
            S PL+V
Sbjct: 223 GSFPLSV 229


>UniRef50_Q97Q93 Cluster: Conserved domain protein; n=16;
           Bacteria|Rep: Conserved domain protein - Streptococcus
           pneumoniae
          Length = 195

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 20/62 (32%), Positives = 35/62 (56%)
 Frame = -3

Query: 480 RFFCLGGVHAVLERSVGAALSLSIWPYGQRY*VLPVIAIWFLVRASGVSLLSHSMTSMCI 301
           +F C+G +  +L+   GA+L   +W YGQR  V+ V  +   ++  G+ L S  + S+C 
Sbjct: 24  KFLCIGEL-TILQVLYGASLFSFLWMYGQRKQVVKV-NMKTRMKCLGIGLASLLIISLCF 81

Query: 300 TL 295
           +L
Sbjct: 82  SL 83


>UniRef50_A7ER70 Cluster: Predicted protein; n=1; Sclerotinia
           sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
           sclerotiorum 1980
          Length = 516

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -2

Query: 217 PPHFRGMYNLITEDFGWSILWRVIIERTFLSRAS 116
           PP  RG++  I+ ++GW+ LW +II   FL+ A+
Sbjct: 185 PPLSRGLFATISREYGWAWLWWIIIP-LFLTAAT 217


>UniRef50_A4TFR1 Cluster: Putative uncharacterized protein; n=1;
           Mycobacterium gilvum PYR-GCK|Rep: Putative
           uncharacterized protein - Mycobacterium gilvum PYR-GCK
          Length = 322

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 322 MRQKTDPTSPDQKPDGNHRQYSIPLTVRPY 411
           +R +T+P +P +  D +HRQYS    VRP+
Sbjct: 252 IRHRTEPGNPAESTDESHRQYSHRWWVRPH 281


>UniRef50_A3EPE7 Cluster: Putative diguanylate phosphodiesterase;
           n=1; Leptospirillum sp. Group II UBA|Rep: Putative
           diguanylate phosphodiesterase - Leptospirillum sp. Group
           II UBA
          Length = 416

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +3

Query: 123 LDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRG--LLNAKVMHNSGCAISRNISYQGLT 296
           L+R VR ++++ R L P++ V+   + R   G    L+   V+  SGC I  N+S   +T
Sbjct: 281 LERIVRGLLSVSRELRPENPVLSETMLRSLFGLDPRLIRIFVLDGSGCQIGENLSRSRIT 340


>UniRef50_Q7QTU1 Cluster: GLP_191_3328_5502; n=11; Giardia
           intestinalis|Rep: GLP_191_3328_5502 - Giardia lamblia
           ATCC 50803
          Length = 724

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 421 KSCTDTSFKHCMNPT*T---KKPPCTGCHS 501
           K CTDTS   C   T +   +KP CTGC+S
Sbjct: 249 KPCTDTSVNECATCTYSDTLRKPVCTGCNS 278


>UniRef50_Q3A8Y3 Cluster: Glycosyl transferase, group 2 family; n=1;
           Carboxydothermus hydrogenoformans Z-2901|Rep: Glycosyl
           transferase, group 2 family - Carboxydothermus
           hydrogenoformans (strain Z-2901 / DSM 6008)
          Length = 288

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 507 GHRMAASAGRFFCLGGVHAVLERS--VGAALSLSIWPYGQRY*VLPVIAIWFLVR 349
           G  M   +  FF +GG   ++ER     A LSL +W  G R  V+P + ++ L R
Sbjct: 154 GGLMVIKSKVFFEVGGFEGLMERWGWEDAELSLRLWLMGYRLLVVPEVVVYHLFR 208


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,656,143
Number of Sequences: 1657284
Number of extensions: 12231943
Number of successful extensions: 26480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26471
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)