Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0627
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0183 - 12705227-12705357,12705935-12706208,12706518-127070...    31   0.76 
03_05_0720 + 27114301-27114548,27114647-27114926,27115104-271151...    29   2.3  
08_02_0983 - 23281787-23281931,23282045-23282163,23282765-232828...    28   5.4  
01_01_0965 - 7589659-7589785,7590188-7590317,7590339-7590438,759...    27   7.1  
10_01_0252 + 2646074-2646430,2646476-2648158                           27   9.4  
09_02_0049 + 3566622-3566666,3567362-3567545,3567865-3568007,356...    27   9.4  
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066...    27   9.4  
05_07_0352 - 29475855-29476330,29476421-29477165,29477689-294780...    27   9.4  

>06_02_0183 -
           12705227-12705357,12705935-12706208,12706518-12707003,
           12707140-12707175
          Length = 308

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 394 EVLSTAGDCHLVFGQG*WGQSFVAFHDLYV 305
           E L+T G+C+ + G    G +F+A HDL V
Sbjct: 238 ETLATRGECYKMLGMN--GNTFIALHDLLV 265


>03_05_0720 +
           27114301-27114548,27114647-27114926,27115104-27115154,
           27115679-27116000,27116610-27116718,27116754-27116802
          Length = 352

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 81  TFGVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKC 212
           +F   RW+      L++  RS++ +H++++P  S    Y+  KC
Sbjct: 310 SFNQTRWSFINTSLLEQ-ARSVVLVHKLMNPSISPSIYYVELKC 352


>08_02_0983 -
           23281787-23281931,23282045-23282163,23282765-23282871,
           23284392-23284470,23285054-23285143,23285259-23285531,
           23285617-23285769,23285969-23286290,23286428-23286672
          Length = 510

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 528 KPSVSPKGHRMAASAGRFFCLGGVHAVLERSVGAALS 418
           KP+  P   RM   +  FF  G  H  L R V AAL+
Sbjct: 117 KPTYPPSKERMIGPSALFFHQGEYHLRLRRLVQAALA 153


>01_01_0965 -
           7589659-7589785,7590188-7590317,7590339-7590438,
           7590524-7590643,7590910-7591145,7591585-7591714
          Length = 280

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 366 WQSPAVLNTSDRKAIWKGKELHRHFFQALHEPHL 467
           + SP     S  + IWKGKE    F  +L E HL
Sbjct: 154 FSSPISRAKSTAEIIWKGKEEPLIFLDSLKEAHL 187


>10_01_0252 + 2646074-2646430,2646476-2648158
          Length = 679

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 384 VLPVIAIWFLVRASGVSLLSH 322
           +L ++ ++FL  ASG+ LLSH
Sbjct: 310 ILRILGLFFLFEASGIFLLSH 330


>09_02_0049 +
           3566622-3566666,3567362-3567545,3567865-3568007,
           3568085-3568148,3571965-3572089,3572430-3572485,
           3573364-3573432,3574984-3575169,3575320-3575407
          Length = 319

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 382 YSIPLTVRPYGKGKSCTDTS--FKH 450
           YS+P+ V P G GKS +D    +KH
Sbjct: 242 YSLPMEVSPQGNGKSYSDVGGMWKH 266


>06_03_0608 +
           22705321-22705652,22705809-22706178,22706264-22706656,
           22707183-22707204,22707257-22707928,22708019-22708494
          Length = 754

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 274 FLEIAHPLLCMTLALSRPRPPHFRGMYNLITED 176
           F E+ + L+ M     RP+ P+FR ++  I +D
Sbjct: 479 FDEVLNSLMAMAKDYIRPKDPNFRSVHKRIRDD 511


>05_07_0352 -
           29475855-29476330,29476421-29477165,29477689-29478081,
           29478167-29478473,29478694-29479019
          Length = 748

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 274 FLEIAHPLLCMTLALSRPRPPHFRGMYNLITED 176
           F E+ + L+ M     RP+ P+FR ++  I +D
Sbjct: 473 FDEVLNSLMAMAKDYIRPKDPNFRSVHKRIRDD 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,150,094
Number of Sequences: 37544
Number of extensions: 363463
Number of successful extensions: 777
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)