Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0627
(530 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15619| Best HMM Match : RVT_1 (HMM E-Value=0.025) 76 2e-14
SB_8630| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_34320| Best HMM Match : Ponericin (HMM E-Value=1.2) 75 4e-14
SB_32862| Best HMM Match : CaM_binding (HMM E-Value=1.4) 75 4e-14
SB_2167| Best HMM Match : Ponericin (HMM E-Value=3.2) 73 1e-13
SB_2784| Best HMM Match : UCR_14kD (HMM E-Value=1.5) 72 3e-13
SB_8366| Best HMM Match : Ponericin (HMM E-Value=2.9) 71 4e-13
SB_20028| Best HMM Match : Ponericin (HMM E-Value=2.9) 71 4e-13
SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05) 31 0.58
SB_23512| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_15071| Best HMM Match : XAP5 (HMM E-Value=3.3) 29 1.8
SB_42806| Best HMM Match : MORN (HMM E-Value=0) 29 3.1
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4) 28 4.1
SB_47335| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_18962| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.7) 28 5.4
SB_11666| Best HMM Match : Arc (HMM E-Value=5) 28 5.4
SB_54936| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_15619| Best HMM Match : RVT_1 (HMM E-Value=0.025)
Length = 485
Score = 76.2 bits (179), Expect = 2e-14
Identities = 29/48 (60%), Positives = 43/48 (89%)
Frame = +3
Query: 87 GVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLL 230
GV++WT+TEL+ +DRK R +MT++ MLHP+++V RLY+PR+CGGRGL+
Sbjct: 374 GVVKWTKTELENIDRKTRKLMTIYGMLHPRANVGRLYLPRQCGGRGLI 421
>SB_8630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 76.2 bits (179), Expect = 2e-14
Identities = 29/48 (60%), Positives = 43/48 (89%)
Frame = +3
Query: 87 GVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLL 230
GV++WT+TEL+ +DRK R +MT++ MLHP+++V RLY+PR+CGGRGL+
Sbjct: 16 GVVKWTKTELENIDRKTRKLMTIYGMLHPRANVGRLYLPRQCGGRGLI 63
>SB_34320| Best HMM Match : Ponericin (HMM E-Value=1.2)
Length = 303
Score = 74.9 bits (176), Expect = 4e-14
Identities = 29/51 (56%), Positives = 43/51 (84%)
Frame = +3
Query: 87 GVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLLNAK 239
GV++WT+TEL+ +DRK R MT++ MLHP+++V RLY+PR+CGGRGL+ +
Sbjct: 50 GVVKWTKTELENIDRKTRKRMTIYGMLHPRANVGRLYLPRRCGGRGLIGVE 100
>SB_32862| Best HMM Match : CaM_binding (HMM E-Value=1.4)
Length = 202
Score = 74.9 bits (176), Expect = 4e-14
Identities = 29/51 (56%), Positives = 43/51 (84%)
Frame = +3
Query: 87 GVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLLNAK 239
GV++WT+TEL+ +DRK R MT++ MLHP+++V RLY+PR+CGGRGL+ +
Sbjct: 16 GVVKWTKTELENIDRKTRKRMTIYGMLHPRANVGRLYLPRRCGGRGLIGVE 66
>SB_2167| Best HMM Match : Ponericin (HMM E-Value=3.2)
Length = 298
Score = 72.9 bits (171), Expect = 1e-13
Identities = 28/51 (54%), Positives = 42/51 (82%)
Frame = +3
Query: 87 GVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLLNAK 239
GV++WT+TEL+ +DRK R MT++ MLHP+++V LY+PR+CGGRGL+ +
Sbjct: 17 GVVKWTKTELENIDRKTRKRMTIYGMLHPRANVGHLYLPRRCGGRGLIGVE 67
>SB_2784| Best HMM Match : UCR_14kD (HMM E-Value=1.5)
Length = 413
Score = 71.7 bits (168), Expect = 3e-13
Identities = 28/51 (54%), Positives = 42/51 (82%)
Frame = +3
Query: 87 GVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLLNAK 239
GV++WT+TEL+ +DRK R MT++ MLHP+++V LY+PR+CGGRGL+ +
Sbjct: 221 GVVKWTKTELENIDRKTRKRMTIYGMLHPRANVGCLYLPRRCGGRGLIGVE 271
>SB_8366| Best HMM Match : Ponericin (HMM E-Value=2.9)
Length = 307
Score = 71.3 bits (167), Expect = 4e-13
Identities = 28/51 (54%), Positives = 42/51 (82%)
Frame = +3
Query: 87 GVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLLNAK 239
GV++WT+TEL+ +DRK R MT++ MLHP+++V RL +PR+CGGRGL+ +
Sbjct: 16 GVVKWTKTELENIDRKTRKRMTIYGMLHPRANVGRLCLPRRCGGRGLIGVE 66
>SB_20028| Best HMM Match : Ponericin (HMM E-Value=2.9)
Length = 279
Score = 71.3 bits (167), Expect = 4e-13
Identities = 28/51 (54%), Positives = 42/51 (82%)
Frame = +3
Query: 87 GVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLLNAK 239
GV++WT+TEL+ +DRK R MT++ MLHP+++V RL +PR+CGGRGL+ +
Sbjct: 16 GVVKWTKTELENIDRKTRKRMTIYGMLHPRANVGRLCLPRRCGGRGLIGVE 66
>SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)
Length = 909
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 99 WTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGL 227
W EL DR+ R ++ + P S +Y+P GGRGL
Sbjct: 192 WPIAELQRRDRESRKVIVKNGGKDPLGSSALVYLPTGLGGRGL 234
>SB_23512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 99 WTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGL 227
W EL DR+ R ++ + P S +Y+P GGRGL
Sbjct: 40 WPIAELQRRDRESRKVIVKNGGKDPLGSSALVYLPTGLGGRGL 82
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 405 AIWKGKELHRHFFQALHEPHLDKKTSL 485
A W G EL RH F+ E HL+K+ L
Sbjct: 578 AKWTGSELSRHRFRKALEDHLEKRQPL 604
>SB_15071| Best HMM Match : XAP5 (HMM E-Value=3.3)
Length = 412
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 313 GHGMRQKTDPTSPDQKPDGNHRQYSIPLTVRP 408
GHG+RQ+TD + + P + QYS + V P
Sbjct: 361 GHGLRQETDQNTGRESPPPQYGQYS-KINVNP 391
>SB_42806| Best HMM Match : MORN (HMM E-Value=0)
Length = 778
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/70 (21%), Positives = 33/70 (47%)
Frame = +2
Query: 164 APPEVLGNEIVHSAEVWWPGPT*RQGHAQQWVCNLKEYFLSRADSVMHIEVMECDKRLTP 343
APP +++ S EV P P Q + W L +F + ++ H+++++ + +
Sbjct: 640 APPPGSADKVPPSPEVQLPSPPPEQDNMHYWETQLNIFFKTLFNAADHLDLIKRAAQNSH 699
Query: 344 LALTKNQMAI 373
A +N ++
Sbjct: 700 FAYIENNNSL 709
>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
Length = 242
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +1
Query: 313 GHGMRQKTDPTSPDQKPDGNHRQYSIPLTVRPYGKGKSCTDTSFKHCMNPT*TKKPPCTG 492
GHG TDPT + P G+ T P+G T T H +PT T+ P
Sbjct: 78 GHGPH--TDPT---RTPHGHDTDPHTDTTQTPHGHDTDPTQTQHGHDTDPTRTRHRPTRR 132
Query: 493 CH 498
H
Sbjct: 133 RH 134
>SB_47335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -2
Query: 244 MTLALSRPRPPHFRGMYNLITEDF 173
+ ++++RP P HFR ++ E+F
Sbjct: 536 LDMSINRPNPKHFRSELRMVVEEF 559
>SB_18962| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.7)
Length = 351
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 99 WTQTELDALDRKVRSIMTLHRMLHPK-SSVMRLYIPRKCGGRG 224
W EL L + R + + HP SS LY+PR GRG
Sbjct: 252 WPIAELQRLSSETRKSILENGGKHPLGSSTALLYLPRGLAGRG 294
>SB_11666| Best HMM Match : Arc (HMM E-Value=5)
Length = 235
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 99 WTQTELDALDRKVRSIMTLHRMLHPK-SSVMRLYIPRKCGGRG 224
W EL L + R + + HP SS LY+PR GRG
Sbjct: 112 WPIAELQRLSSETRKSILENGGKHPLGSSTALLYLPRGLAGRG 154
>SB_54936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 247 CMTLALSRPRPPHFRG 200
CMT+A++RP+P F+G
Sbjct: 97 CMTVAVTRPKPTPFKG 112
>SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = -2
Query: 361 VFGQG*WGQSFVAFHDLYVHHTVSP**EIFLEIAHPLLCMTLALSRPRPPHFRGMYNLIT 182
++G G +G +F HD+Y+ + +L H + + + F G YN
Sbjct: 604 IYGNGNYGPTFGGGHDIYLANDAINNGNSYLNFGHSYVQIRGYIGGEAQKLFSGAYNFRP 663
Query: 181 EDF 173
+D+
Sbjct: 664 DDY 666
>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 384 LNTSDRKAIWKGKELHRHFFQALHEPHLDKKTSLHWLPFGDLL 512
+NT I G +H +FQ+ H P +SL WL G LL
Sbjct: 126 INTMIFNMIISGSSMH--YFQSHHLPVTAGSSSLWWLRSGSLL 166
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,044,694
Number of Sequences: 59808
Number of extensions: 412789
Number of successful extensions: 801
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -