Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0627
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC017117-11|AAF16621.1|  303|Caenorhabditis elegans Hypothetical...    30   0.90 
AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical ...    29   2.1  
AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical ...    28   3.6  
U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily ass...    28   4.8  
Z67879-3|CAA91789.2|  278|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF106583-5|AAD03136.1|  301|Caenorhabditis elegans Hypothetical ...    27   8.4  
AC024801-12|AAF59643.4|  569|Caenorhabditis elegans Hypothetical...    27   8.4  

>AC017117-11|AAF16621.1|  303|Caenorhabditis elegans Hypothetical
           protein F43C11.11 protein.
          Length = 303

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 91  CSGGLRPNWMPWIEKSAQL*PSIGCSTRS 177
           C G + P+W P++E + ++    GCS  S
Sbjct: 182 CKGSMCPDWTPYLEDTVEIIEQDGCSVPS 210


>AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical
           protein F29G9.2b protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 326 RIP*PLCASHCQPLIGNIP*DCTPTVVHDLGVK*APATTLPRNVQSHYRGLRVE 165
           +I  P+C+S       N+  DC P ++        P TTL  + Q   R + VE
Sbjct: 461 KIAPPICSSLVLTNFDNMSEDCAPRLMRSASETCRPTTTLISSTQPAQRSVSVE 514


>AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical
           protein F29G9.2a protein.
          Length = 535

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 326 RIP*PLCASHCQPLIGNIP*DCTPTVVHDLGVK*APATTLPRNVQSHYRGLRVE 165
           +I  P+C+S       N+  DC P ++        P TTL  + Q   R + VE
Sbjct: 471 KIAPPICSSLVLTNFDNMSEDCAPRLMRSASETCRPTTTLISSTQPAQRSVSVE 524


>AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical
           protein C52E2.4 protein.
          Length = 658

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 393 SDRKAIWKGKELHRHFFQALHEPHLDKKT--SLHWL 494
           SD   +W  + L + +F +  +PH+D +T  S  WL
Sbjct: 286 SDGDKLWPVQRLMKEYFLSKMQPHIDSRTESSTSWL 321


>U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 127 protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 319 GMRQKTDPTSPDQKPDGNHRQYSIPLTVRPYGKGKSCTDTSFKHCMNP 462
           G++Q++  +SPDQK  G   Q   P T  P     +   TS   C+ P
Sbjct: 630 GLKQRSRSSSPDQKELGTPAQIGSPQTNTPCRDSPTLLITS-DDCVEP 676


>Z67879-3|CAA91789.2|  278|Caenorhabditis elegans Hypothetical
           protein C05E7.4 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +1

Query: 217 AGAYLTPRSCTTVGVQSQGIFPIKG*QCDAH 309
           A  YLT  SC+ VGV   GIF I      AH
Sbjct: 59  AAKYLTALSCSDVGVCMAGIFVICSDSLRAH 89


>AF106583-5|AAD03136.1|  301|Caenorhabditis elegans Hypothetical
           protein F23C8.8 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 280 EIFLEIAHPLLCMTLALSRPRPPHF 206
           EI +++ HP +   LA++RP P  F
Sbjct: 74  EITMKVRHPHIARCLAITRPAPTKF 98


>AC024801-12|AAF59643.4|  569|Caenorhabditis elegans Hypothetical
           protein Y50D7A.8 protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 295 QCDAHRGHGMRQKTDPTSPDQKPDGNHRQ 381
           Q +A +    RQ+    +P+QK D NHR+
Sbjct: 188 QANAKKAEAARQRYHRMTPEQKRDYNHRR 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,037,249
Number of Sequences: 27780
Number of extensions: 284027
Number of successful extensions: 597
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)