Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0627
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g32904.1 68416.m04164 hypothetical protein                          29   2.6  
At1g04130.1 68414.m00402 tetratricopeptide repeat (TPR)-containi...    29   2.6  
At2g34720.1 68415.m04264 CCAAT-binding transcription factor (CBF...    28   3.4  
At2g15290.1 68415.m01744 expressed protein                             28   4.5  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    27   7.9  

>At3g32904.1 68416.m04164 hypothetical protein 
          Length = 330

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 313 GHGMRQ-KTDPTSPDQKPDGNHRQYSIPLTVRPYGKGKS 426
           GHG +Q  T PT+P      N  Q++IP T   +G   S
Sbjct: 271 GHGFQQWGTPPTAPQWNSPSNVPQWTIPPTTPQWGTPSS 309


>At1g04130.1 68414.m00402 tetratricopeptide repeat (TPR)-containing
           protein contains non-consensus donor splice site AT at
           exon 4 and acceptor splice site at exon5; Contains
           similarity to serine/threonine protein phosphatase
           gb|X83099 from S. cerevisiae, SP|O95801
           Tetratricopeptide repeat protein 4 Homo sapiens;
           contains Pfam profile PF00515: TPR Domain
          Length = 360

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 369 QSPAVLNTSDRKAIWKGKELHRHFFQALHEPHLDKKTSLHW 491
           ++ A L+  + + +  GK ++R     L +P LDK   LHW
Sbjct: 168 EAKACLSAIENRGVKIGKAMYREL-TGLKKPMLDKNNILHW 207


>At2g34720.1 68415.m04264 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 198

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 87  GVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLLNAK 239
           G+LR  Q+    L+ + R+I      +H    +  +  PR CGGR  LNAK
Sbjct: 109 GILRRRQSRAK-LEARNRAIKAKKPYMHESRHLHAIRRPRGCGGR-FLNAK 157


>At2g15290.1 68415.m01744 expressed protein
          Length = 296

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 462 GVHAVLERSVGAALSLSIWPY--GQRY*VLPVIAI-WFLVRASGVSLLSHSMTSMC 304
           G+ A +   V  AL+ S  P+  G      PV+A+  FLV+AS  +LLSH +  +C
Sbjct: 219 GMQATVGFLVAKALTTSANPFYQGVSQGYSPVLALDVFLVQASANTLLSHFLGLVC 274


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 528 KPSVSPKGHRMAASAGRFFCL 466
           KP V P GH++ A++   FCL
Sbjct: 394 KPDVLPSGHKVKANSRILFCL 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,508,985
Number of Sequences: 28952
Number of extensions: 274499
Number of successful extensions: 638
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)