Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0623
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 28 1.0
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 27 1.4
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.8
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 3.1
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 26 4.1
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 5.5
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 25 9.5
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 25 9.5
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 25 9.5
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 151 FKDPSESKKKKHE--YNKFSNLCQQLSESTGTTSSSALKNVY 270
+ DP + + KH+ Y KF N + ++ +GT SS A +Y
Sbjct: 468 YHDPIDGSESKHQGLYIKFENGSRIVTRLSGTGSSGATLRLY 509
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 1.4
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -1
Query: 247 NWWFQSILKAVDKGLKIYCIHVFFFYF 167
NWW++S + G+ ++ VF+++F
Sbjct: 553 NWWWRSFITPGFCGIYVFIFSVFYWFF 579
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 254 ADELVVPVDSES-C*QRFENLLYSCFFFLLSEGSLNNDFNNMIYV 123
A++L+ D + C LY+C F L+EGS + +N IYV
Sbjct: 402 AEKLISQSDESTLCKHYVYASLYACLFCNLNEGSPKDYLDNDIYV 446
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 193 NKFSNLCQQLSESTGTTSSSALKNVYATLMMTCVSASAGVYVDMFTRFQAGFLS 354
NKFS+ C+Q+ + + V + M +S S + T+ QA LS
Sbjct: 412 NKFSSFCEQVKQRIPVVKQQRSEIVRNNIYMNFLSESLETSNNNLTKVQAELLS 465
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -3
Query: 251 DELVVPVDSESC*QRFENLLYS---CFFFLLSEGSLNNDFNNMIYVFLFEV*NIYSF 90
D+ + E C + EN L+S FLL SL+ND +N++ V NI +F
Sbjct: 388 DQTTLRAFGEICTGKLENTLFSNSELNLFLLHYLSLDNDLSNILKVDFQNGHNICTF 444
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/55 (21%), Positives = 29/55 (52%)
Frame = +1
Query: 241 TSSSALKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDN 405
++ + + N+ + ++ + A+ V V++ TR + IVG ++ + TP+N
Sbjct: 747 SAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGNSVVARTVYTPNN 801
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 148 LFKDPSESKKKKHEYNKFSNLCQQLSESTGTTSS 249
L+++PS + H+ + N Q+LSE+ +TSS
Sbjct: 417 LWREPSFPLIEHHDNSLLDNRFQKLSETISSTSS 450
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 419 LVFFPLSGVAINMSIRPAPTMADKNPAWNLVNIS 318
LVF S I+ +IRP+ + D W L S
Sbjct: 161 LVFLHGSAKVIHYNIRPSSVVVDAKGDWKLCGFS 194
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/74 (21%), Positives = 30/74 (40%)
Frame = -3
Query: 515 YDNGSTTLTYSSRGPMLMPDVNPNPSR*PSRKLVFFPLSGVAINMSIRPAPTMADKNPAW 336
+D + + + S + + + SR +F P + N+S+ A A W
Sbjct: 115 FDQSPSQIPFPSSNTEDSSEESDSSSRASRLAKLFRPPYDIISNLSLDEARIEASSQKRW 174
Query: 335 NLVNIST*TPADAE 294
LVN+ T T + +
Sbjct: 175 ILVNLQTSTSFECQ 188
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 116 IEKHRSYY*NHCLKTLQKVKKKNMNTINFQTFVNSFQNRLEPPVRQLLK 262
I K +Y N LKT+ + +TF+++F N +E ++++K
Sbjct: 321 IHKVEDFYRNGTLKTVNTELVSLKEDADEKTFLDTFLNAIEGHGKKIIK 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,418
Number of Sequences: 5004
Number of extensions: 47544
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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