Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0623
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0560 + 4162206-4162607                                           30   1.0  
01_06_1689 + 39204726-39205131,39208214-39208602,39208686-392088...    29   3.2  
05_07_0323 + 29260608-29260836,29262242-29262513,29263349-292634...    28   5.5  
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    27   7.3  
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    27   9.7  
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    27   9.7  

>03_01_0560 + 4162206-4162607
          Length = 133

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 325 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 474
           F  F  G   A+  A L L+L+A  D     +   G+L G  LT   S+G
Sbjct: 58  FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107


>01_06_1689 +
           39204726-39205131,39208214-39208602,39208686-39208820,
           39208936-39209001,39209150-39209218,39209402-39209455
          Length = 372

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 211 CQQLSESTGTTSSSALKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLI 390
           C+    +T TTS++A  +V    +      S  ++VD  +     F  +   AGL+  L+
Sbjct: 72  CESSCRTTTTTSTAAAADVGRHPLERAYGGSGEIHVDASSAAVPLFRHSSSPAGLLSRLM 131

Query: 391 ATP-DNGKNTNLRLGYLLGFGLTSG 462
           A P  NG      +G   G G  +G
Sbjct: 132 ADPHGNGMAATRGMGGYSGGGGDAG 156


>05_07_0323 +
           29260608-29260836,29262242-29262513,29263349-29263487,
           29263581-29263714,29263847-29263970,29264364-29264773
          Length = 435

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 509 NGSTTLTYSSRGPMLMPDVNPNPSR*PSRKLVFFP 405
           N +T+ +YS   P   P  NP+PSR P R     P
Sbjct: 376 NATTSYSYSQSQPP-SPSANPSPSRSPMRSSASSP 409


>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 220 LSESTGTTSSSALKNVYATLMMTCVSASAGVYVDM-FTRFQAGFLSAI 360
           +     +TS   +K + A+L  TC S S   Y D+   R+    +SAI
Sbjct: 433 IKNKANSTSQQFVKKMMASLPYTCQSQSPSPYFDLSLFRYDEKLISAI 480


>01_04_0124 +
           16359695-16359734,16360217-16360453,16361133-16362104,
           16362211-16362398,16362564-16363942,16364024-16365047,
           16365171-16365566,16367484-16367999,16368085-16368226,
           16369409-16369553,16371351-16371432,16371851-16371895,
           16372018-16372140
          Length = 1762

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 166 ESKKKKHEYNKFSNLCQQLSESTGTTSSSALKN 264
           ++ K  H  N+FS+L  ++    G++SSS+L +
Sbjct: 311 DNNKDSHSSNRFSSLFSKVQGLIGSSSSSSLSS 343


>01_01_0827 +
           6443319-6446085,6446317-6446407,6446502-6448017,
           6448164-6448243,6449045-6449129,6449221-6449312,
           6449388-6449456,6449544-6449580,6449662-6449744,
           6450427-6450873,6450978-6451014,6451101-6451158,
           6451243-6451382,6451610-6451675,6451794-6451908,
           6453261-6453299,6453482-6453543
          Length = 1927

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 512 DNGSTTLTYSSRGPMLMPDVNPNPSR*PSRK 420
           D G T +  SS GP    D+N  P+R P +K
Sbjct: 67  DAGLTEVVGSSAGPTECIDLNKTPARKPKKK 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,889,757
Number of Sequences: 37544
Number of extensions: 282511
Number of successful extensions: 578
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)