Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0623
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                28   4.3  
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)        27   7.5  
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.5  
SB_24133| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1214

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 145 SLFKDPSESKKKKHEYNKFSNLCQQLSESTGTTSSSALKNVYATLMMTCVSASAGVYV 318
           SL +D S+  +K H +        Q +++T  TS+S L      + + C S  AGV +
Sbjct: 762 SLGQDSSKLHEKTHGHLTMKTNTSQ-TDNTSETSTSPLSTPIFEIQLVCYSVIAGVSI 818


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 251 DELVVPVDSESC*QRFENLLYSCFFFLLSEGSLNNDFNNMIYVFLFEV 108
           ++LV+P +++    RF   L    FFL S    +  F   ++ +L +V
Sbjct: 30  EDLVIPKENDDIKHRFFQSLNKSTFFLPSLNKYDEGFQKFLFSYLLDV 77


>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 134 YY*NHCLKTLQKVKKKNMNTINFQTFVNSFQNRLEPPVRQLLKMFTPH 277
           ++ N  L    +  +KN N + F  F  SF        RQ +K+F  H
Sbjct: 52  HFVNEVLHDSSRHDEKNPNPVRFGRFRGSFYELSSKDARQTMKLFLRH 99


>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
          Length = 350

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 95  YKYFRLQIEKHRSYY*NHC-LKTLQKVK 175
           Y+Y +    KH+ YY  HC LK   KVK
Sbjct: 104 YRYCKSYFGKHKCYYKYHCYLKCFCKVK 131


>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 518  YYDNGSTTLTYSSRGPMLMPDVNPNPSR*PSRKLVFFPLSGV 393
            YYDN S  L   +R P       PNPSR P +    +P S V
Sbjct: 1353 YYDNPSRPLKSPNRYPYPRVKYYPNPSR-PLKSPNHYPYSRV 1393


>SB_24133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = +1

Query: 184 HEYNKFSN--LCQQLSESTGTTSSSALKNVYATLMMT-CVSA---SAGVYVDMFTRFQAG 345
           H Y K ++  L Q  +  TG  SSS   N    L  +  VSA   + G YV  F R  AG
Sbjct: 470 HIYGKRADYFLFQFRTRLTGNASSSTAVNAAEYLKDSELVSADVYAVGCYVPAFNRLSAG 529

Query: 346 FLSAIVG 366
           F    +G
Sbjct: 530 FFGGDLG 536


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,437,373
Number of Sequences: 59808
Number of extensions: 333744
Number of successful extensions: 729
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)