Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0623
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-...    27   6.6  
Z81047-9|CAB02835.2|  339|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical p...    27   8.7  
AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical
           protein AC3.5 protein.
          Length = 1090

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 160 PSESKKKKHEYNKFSNLCQQLSESTGTTSSSALKN-VYATLM 282
           P + K     Y K     +++S S G  SS+ LKN +YA L+
Sbjct: 821 PIQDKLNSFIYQKIHKKFEEISSSPGEASSNYLKNRLYANLL 862


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical
           protein F54B3.1b protein.
          Length = 3394

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 175 KKKHEYNKFSNLCQQLSES 231
           K++H++NKF +LC+  S+S
Sbjct: 155 KRRHKHNKFDSLCESDSQS 173


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical
           protein F54B3.1a protein.
          Length = 3396

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 175 KKKHEYNKFSNLCQQLSES 231
           K++H++NKF +LC+  S+S
Sbjct: 155 KRRHKHNKFDSLCESDSQS 173


>Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical
           protein R13H4.1 protein.
          Length = 1305

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 136 LLKSLFKDPSESKKKKHEYNKFSNLCQQLSESTGTTSSSALKNVYATLMMTCV 294
           ++ S   D   S+KK  ++ K SN  +QL          AL+N+YA   M  +
Sbjct: 284 IISSNAGDTLRSRKKPIDFGKSSNWEEQLLFQAAGNPRLALRNLYADPRMAII 336


>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
           nephrocystin-4-like protein protein.
          Length = 1305

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 136 LLKSLFKDPSESKKKKHEYNKFSNLCQQLSESTGTTSSSALKNVYATLMMTCV 294
           ++ S   D   S+KK  ++ K SN  +QL          AL+N+YA   M  +
Sbjct: 284 IISSNAGDTLRSRKKPIDFGKSSNWEEQLLFQAAGNPRLALRNLYADPRMAII 336


>Z81047-9|CAB02835.2|  339|Caenorhabditis elegans Hypothetical
           protein C41G6.11 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +1

Query: 184 HEYNKFSNLCQQLSESTGTTSSSALKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIV 363
           H Y    ++  QLS  T     SAL+++ A    T V+   G  V +   F   +   I 
Sbjct: 236 HMYRTLKSVQNQLSSITMGRHKSALRSLVAQFATTPVAMLPGGIVALCVVFPTDYSQKIT 295

Query: 364 GAGLMLM 384
              +M+M
Sbjct: 296 WYSIMVM 302


>Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 130 IILLKSLFKDPSESKKKKHEYNKFSNLCQQLSESTGTTSSSALKNV 267
           II+L  L+K   +S K + + +KF+ + Q  S    T   SA K +
Sbjct: 775 IIVLMLLYKRNKKSNKVQFQLHKFNEVGQIASGGASTVRLSASKTI 820


>AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 130 IILLKSLFKDPSESKKKKHEYNKFSNLCQQLSESTGTTSSSALKNV 267
           II+L  L+K   +S K + + +KF+ + Q  S    T   SA K +
Sbjct: 775 IIVLMLLYKRNKKSNKVQFQLHKFNEVGQIASGGASTVRLSASKTI 820


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,460,177
Number of Sequences: 27780
Number of extensions: 264000
Number of successful extensions: 686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)