Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0623
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79360.1 68414.m09248 transporter-related low similarity to S...    29   2.0  
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    27   6.1  
At5g01890.1 68418.m00108 leucine-rich repeat transmembrane prote...    27   6.1  
At4g36550.1 68417.m05190 U-box domain-containing protein low sim...    27   6.1  
At2g42710.1 68415.m05289 ribosomal protein L1 family protein           27   6.1  
At2g24170.1 68415.m02888 endomembrane protein 70, putative simil...    27   6.1  
At4g08593.1 68417.m01414 expressed protein ; expression supporte...    27   8.1  
At3g49790.1 68416.m05444 expressed protein predicted protein, Ar...    27   8.1  

>At1g79360.1 68414.m09248 transporter-related low similarity to
           SP|O76082 Organic cation/carnitine transporter 2 (Solute
           carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) {Homo
           sapiens}; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 527

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +1

Query: 280 MMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTS 459
           M+T  S +  VY  +  RF  GF  A +G     ++++T   GK    R+G +  FG   
Sbjct: 157 MLTVFSPNIWVYAVL--RFVNGFGRATIGT--CALVLSTELVGKKWRGRVGIMSFFGFML 212

Query: 460 GMSMGPLLEY 489
           G    PL+ Y
Sbjct: 213 GFLSLPLMAY 222


>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 154 KDPSESKKKKHEYNK--FSNLCQQLSESTG 237
           +D +E +KKK E  K  F NLC+ + E  G
Sbjct: 529 EDETEEEKKKREEKKKSFENLCKTIKEILG 558


>At5g01890.1 68418.m00108 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich receptor-like protein
           (LRPKm1) - Malus domestica, EMBL:AF053127
          Length = 967

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 240 HQFVSS*KCLRHINDDMRLCICW 308
           H+FVS     RH++ D  +C+ W
Sbjct: 761 HEFVSGGSLYRHLHGDESVCLTW 783


>At4g36550.1 68417.m05190 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 577

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 21  QNENYLFVLL*LV--KLEYCCCVILKAINI 104
           + EN + +LL L   K+EYCC V+ +A +I
Sbjct: 459 EQENAISILLQLCVQKIEYCCLVVREATDI 488


>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
          Length = 415

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 361 VGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 474
           VGA +  +L+A P   K T+   GY+  F L S M  G
Sbjct: 357 VGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKG 394


>At2g24170.1 68415.m02888 endomembrane protein 70, putative similar
           to  MURA transposase of maize Mutator transposon
          Length = 637

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 244 WWFQSILKAVDKGLKIYCIHVFFFYFLKGL*TMIS-II*SMFFYLKSKIFIAFNMTQQQY 68
           WW++S L +    + ++   VF+FY    +  ++S ++   +  + S +F  F      Y
Sbjct: 562 WWWRSYLTSGSSAVYLFLYAVFYFYTKLEITKLVSAVLYFGYMLIVSYVFFVFTGAIGFY 621

Query: 67  SSF 59
           + F
Sbjct: 622 ACF 624


>At4g08593.1 68417.m01414 expressed protein ; expression supported
           by MPSS
          Length = 270

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 361 VGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMGPLL 483
           VG GL    +ATP      +   G  L   LT+G+ +GPLL
Sbjct: 33  VGCGLQSCKVATPSVWP-ISYHEGSALRISLTTGLYLGPLL 72


>At3g49790.1 68416.m05444 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 366

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 322 MFTRFQAGFLSAIVGA---GLMLMLIATPDNGKNTNL 423
           +FT+  +GF SAIVG+    L++ L ++  +G N+ L
Sbjct: 137 LFTKSGSGFASAIVGSFARNLVVALYSSAGDGSNSKL 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,517,188
Number of Sequences: 28952
Number of extensions: 238900
Number of successful extensions: 597
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)