Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0622
         (553 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7P870 Cluster: Chromosome chr3 scaffold_8, whole genom...    28   0.32 
UniRef50_Q5ALJ9 Cluster: Putative uncharacterized protein; n=1; ...    29   1.2  
UniRef50_A5UT66 Cluster: Peptidase dimerisation domain protein; ...    33   4.4  
UniRef50_Q26BQ8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  
UniRef50_Q58P62 Cluster: Cation/H+ exchanger; n=5; Arabidopsis t...    33   5.8  

>UniRef50_A7P870 Cluster: Chromosome chr3 scaffold_8, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr3 scaffold_8, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 108

 Score = 28.3 bits (60), Expect(2) = 0.32
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 470 WHRWWRWWILCSFAFGYWRIICCLE 396
           W RWW W  L  F + +W+ +   E
Sbjct: 65  WRRWWEW--LIGFQYFWWKRLLVYE 87



 Score = 27.9 bits (59), Expect(2) = 0.32
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 482 TVCYWHRWWRWWI 444
           ++ YW+RWW W++
Sbjct: 39  SLVYWNRWWDWFL 51


>UniRef50_Q5ALJ9 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 105

 Score = 28.7 bits (61), Expect(2) = 1.2
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -3

Query: 470 WHR--WWRWWILCSFAFGYWRIICCL 399
           W R  WWRWW L S  +   +   CL
Sbjct: 54  WRRMWWWRWWQLISIFYQLHQYPVCL 79



 Score = 25.4 bits (53), Expect(2) = 1.2
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 1/11 (9%)
 Frame = -3

Query: 476 CYWHRW-WRWW 447
           C W  W WRWW
Sbjct: 38  CIWWGWVWRWW 48


>UniRef50_A5UT66 Cluster: Peptidase dimerisation domain protein;
           n=9; Bacteria|Rep: Peptidase dimerisation domain protein
           - Roseiflexus sp. RS-1
          Length = 475

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 321 KPLVIIQCYEDRQPTLPLKKTDHLPFE-ATNDPPIPKREATED 446
           KP V+I  + D QP  PL+  DH PFE    D  +  R A++D
Sbjct: 77  KPTVLIYGHFDTQPADPLELWDHPPFEPVVRDGRVYARGASDD 119


>UniRef50_Q26BQ8 Cluster: Putative uncharacterized protein; n=1;
           Flavobacteria bacterium BBFL7|Rep: Putative
           uncharacterized protein - Flavobacteria bacterium BBFL7
          Length = 132

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = -1

Query: 322 FDLLILFIFNVAYKRTRKTFEII*RLIAKTHMAFVKVIFLLAYFYIFGNNTL 167
           F LL++ ++ +A+    K FE +  L+A    A  K  +++AY Y F NN++
Sbjct: 44  FGLLMIMVWGLAFIAVAKVFENVKWLVAV--FALEKFCYVIAYGYWFANNSV 93


>UniRef50_Q58P62 Cluster: Cation/H+ exchanger; n=5; Arabidopsis
           thaliana|Rep: Cation/H+ exchanger - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 859

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +3

Query: 216 FTKAICVFAINLYIISNVFLVRL*ATLKMKRINKSKPLVI 335
           FT  +  FA NL ++ N+FL+ L   L+M RI + KP++I
Sbjct: 110 FTMVLETFA-NLALVYNIFLLGLGMDLRMVRITELKPVII 148


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 526,925,397
Number of Sequences: 1657284
Number of extensions: 10011314
Number of successful extensions: 23639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23605
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)