Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0622
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    31   0.11 
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   1.4  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    27   2.4  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   2.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   4.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   7.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.4  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   9.8  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   9.8  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 46  FTPTRLIYECDFSRTGTIIANLGGLFNISQIYKVRNTN 159
           F P ++  EC+  +   +IA   GL+N+S+ + +RNT+
Sbjct: 18  FRPDKITSECNTPQQQNVIAE--GLYNVSEPFPIRNTD 53


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 64  IYECDFSRTGTIIANLGGLFNISQIYKVRNTNNC*VYCFRRYKNTRAKKLPSRKPYVFS 240
           +   DFS TG    + G      +IY VR  ++  VY  +R +   A K      Y+FS
Sbjct: 276 VMSVDFSPTGQEFVS-GSYDKTIRIYNVREGHSRDVYHTKRMQRVTAVKFSMDAQYIFS 333


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 455 RWWILCSFAFGYWRIIC 405
           R W L  FAFG++ +IC
Sbjct: 263 RVWTLLPFAFGFYNLIC 279


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 321 KPLVIIQCYEDRQPTLPLKKTDHLPFEATN 410
           +PLV   C EDRQ T   K+   LP + ++
Sbjct: 160 QPLVDHDCIEDRQKTFASKQLPTLPLQKSS 189


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 317 IETFGHHPVLRRQTTYFAAQENR 385
           +E FG+HP   RQ + FA+ ++R
Sbjct: 270 VEAFGNHPPWWRQLSNFASVQDR 292


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 320 ETFGHHPVLRRQTTYFAAQENR 385
           E FG HP  +RQ + FA+ ++R
Sbjct: 256 EAFGSHPDWQRQLSKFASVQDR 277


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 320 ETFGHHPVLRRQTTYFAAQENR 385
           E FG HP  +RQ + FA+ ++R
Sbjct: 263 EAFGSHPDWQRQLSKFASVQDR 284


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 410  ICCLER---KVIGFLERQSRLSVFVTLDDDQRFRFVNS 306
            IC L +   +++ F  +Q+   + V   D+Q  R VNS
Sbjct: 1223 ICSLAKNLSRIVEFRRKQANFQLIVITHDEQFIRLVNS 1260


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 384 DHLPFEATNDPPIPKREATE 443
           +H+P E    P +PKRE  E
Sbjct: 12  EHIPAEDLETPKLPKREKIE 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,337
Number of Sequences: 5004
Number of extensions: 45763
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)