Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0622
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis...    30   0.96 
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis...    30   0.96 
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug
           resistance related protein2 protein.
          Length = 1525

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +1

Query: 175 CFRRYKNTRAKKLPSRKPYVFSRLTFI*FQTFSSCVYKPR*K*RELTNRNLWSSSSVTKT 354
           CF    +   K   S   Y  S +  + FQ F+   Y    K   L N +LW  + + K 
Sbjct: 192 CFADVPSDMYKSESSCPEYTASFINRLTFQWFTGLAYLGNKK--SLENEDLWDLNEIDKA 249

Query: 355 DNLL---CRSRKPITFRSRQQMILQYPNAKLQRIH 450
           +NL+    ++ KP       Q I + P+A L + H
Sbjct: 250 ENLIPSFMQNLKP-RIDEYHQNIKKDPSAALPKNH 283


>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 2 protein.
          Length = 1525

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +1

Query: 175 CFRRYKNTRAKKLPSRKPYVFSRLTFI*FQTFSSCVYKPR*K*RELTNRNLWSSSSVTKT 354
           CF    +   K   S   Y  S +  + FQ F+   Y    K   L N +LW  + + K 
Sbjct: 192 CFADVPSDMYKSESSCPEYTASFINRLTFQWFTGLAYLGNKK--SLENEDLWDLNEIDKA 249

Query: 355 DNLL---CRSRKPITFRSRQQMILQYPNAKLQRIH 450
           +NL+    ++ KP       Q I + P+A L + H
Sbjct: 250 ENLIPSFMQNLKP-RIDEYHQNIKKDPSAALPKNH 283


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 312 NKSKPLVIIQCYEDRQPTLPLKKTDHLPFEATNDPPIPKREATE 443
           N+S+P+V+ Q  +  +  +P+K+ D   F    D  +  +E TE
Sbjct: 688 NESEPVVVKQDVKITEEPVPMKRLDEKAFLDKIDQVVESQEETE 731


>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
            protein Y113G7C.1 protein.
          Length = 1494

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 300  MKRINKSKPLVIIQCYEDRQPTLPLKKTDHLPFEATNDPPIPKREA 437
            M+ + KS+  +++ C      T     T++L  E  NDP I   EA
Sbjct: 1351 MELVKKSENPIVVHCSAGIGRTTAFIGTEYLAREVENDPKIELTEA 1396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,404,086
Number of Sequences: 27780
Number of extensions: 251566
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)