Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0622
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05580.1 68414.m00578 cation/hydrogen exchanger, putative (CH...    33   0.17 
At5g51670.1 68418.m06406 expressed protein contains Pfam domain ...    28   4.8  
At3g51310.1 68416.m05616 vacuolar protein sorting-associated pro...    28   4.8  
At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative sim...    28   4.8  
At5g05290.1 68418.m00568 expansin, putative (EXP2) identical to ...    27   8.3  

>At1g05580.1 68414.m00578 cation/hydrogen exchanger, putative
           (CHX23) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 867

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +3

Query: 216 FTKAICVFAINLYIISNVFLVRL*ATLKMKRINKSKPLVI 335
           FT  +  FA NL ++ N+FL+ L   L+M RI + KP++I
Sbjct: 110 FTMVLETFA-NLALVYNIFLLGLGMDLRMVRITELKPVII 148


>At5g51670.1 68418.m06406 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 474

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 201 SRIFISSETIHLTIVCVTNFVNLTYVKES-AKVSNYCTGA 85
           ++I    ET HL++VC     +L +   S +++SN CT A
Sbjct: 77  TKIVNGDETFHLSLVCAELADSLAHAANSVSRLSNRCTTA 116


>At3g51310.1 68416.m05616 vacuolar protein sorting-associated
           protein 35 family protein / VPS35 family protein similar
           to vacuolar protein sorting 35 [Mus musculus]
           GI:11875394; contains Pfam profile PF03635: Vacuolar
           protein sorting-associated protein 35
          Length = 783

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 16  CSVDRIAYRAFTPTRLIYECDFSRTGTIIANLGGLFNISQIYKVRNTNN 162
           C ++ +AY  FT   L+YE + S +   +  L  +    Q  +V N  N
Sbjct: 580 CELETVAYEFFTKAYLLYEEEISDSKAQVTALRLIIGTLQRMRVFNVEN 628


>At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative
           similar to monovalent cation:proton antiporter family 2
           (CPA2) members (see PMID:11500563 for other members)
          Length = 735

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 246 NLYIISNVFLVRL*ATLKMKRINKSKPLVI 335
           NL ++ NVFL+ L   L+M +I   KP++I
Sbjct: 8   NLALVYNVFLLGLGLDLRMIKIKDIKPVII 37


>At5g05290.1 68418.m00568 expansin, putative (EXP2) identical to
           expansin At-EXP2 [Arabidopsis thaliana]
           gi|1041708|gb|AAB38073; alpha-expansin gene family,
           PMID:11641069
          Length = 255

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 111 KVSNYCTGA*KIAFVNQPCWREGAVRNTIDG 19
           +++ Y  G   +AF   PC + G +R TI+G
Sbjct: 139 QIAQYRAGIVPVAFRRVPCEKGGGIRFTING 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,613,421
Number of Sequences: 28952
Number of extensions: 229480
Number of successful extensions: 516
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)