Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0621
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)                   29   2.0  
SB_47260| Best HMM Match : ig (HMM E-Value=4.3e-13)                    28   6.2  

>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
          Length = 570

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +2

Query: 116 ISRQLILLR--CFQTTL*YNSV*-YIAHSTTISCPIHCYGHVHTVFYYIY*LNIRCYTIW 286
           IS+ L LL   C+   L Y S+  Y+ H       +    H H   YY       C T+W
Sbjct: 321 ISQPLPLLHKLCYYVALQYRSLCHYLLHKLCYCVALQYCSHCH---YYT-----SCATVW 372

Query: 287 HYSIA 301
           HY+IA
Sbjct: 373 HYNIA 377



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +2

Query: 116 ISRQLILLR--CFQTTL*YNSV*-YIAHSTTISCPIHCYGHVHTVFYYIY*LNIRCYTIW 286
           IS+ L LL   C+   L Y S+  Y+ H       +    H H   YY       C T+W
Sbjct: 158 ISQPLPLLHKLCYCVALQYRSLCHYLLHKLCYCVALQYRSHCH---YYT-----SCATVW 209

Query: 287 HYSIA 301
           HY+IA
Sbjct: 210 HYNIA 214



 Score = 28.3 bits (60), Expect = 4.7
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +2

Query: 116 ISRQLILLR--CFQTTL*Y-NSV*YIAHSTTISCPIHCYGHVHTVFYYIY*LNIRCYTIW 286
           IS+ L LL   C+   L Y N   Y+ H       +    H H   YY       C T+W
Sbjct: 230 ISQPLPLLHKLCYCVALQYRNHCHYLLHKLCYCVALQYRSHCH---YYT-----SCATVW 281

Query: 287 HYSIA 301
           HY+IA
Sbjct: 282 HYNIA 286


>SB_47260| Best HMM Match : ig (HMM E-Value=4.3e-13)
          Length = 402

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 179 YIAHSTTISCPIHCYGHVHTVFYYIY*LNIRCYTIWHYSIA*SERSFIIDNIII 340
           YI    T+SCP H Y    ++ +Y Y   ++  T   Y  A + R  I+ N+++
Sbjct: 39  YIGDDVTLSCPNHSYQGNFSITWYKYNEPLQEVT---YRDAINTRMLILSNLLL 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,276
Number of Sequences: 59808
Number of extensions: 234468
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)