Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0619
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    29   0.40 
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    28   1.2  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   5.0  

>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = -3

Query: 381 PHPSNRNALLLRGRNMQGGGTYPCELRRRPTTSKSHE*ATVNYYSFNFL 235
           PHP N   ++L G N Q     P     +       E A  + Y F FL
Sbjct: 97  PHPDNSKIVILMGSNFQNDANSPLHPFAQSIIKNRREYAERHGYKFEFL 145


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -3

Query: 381 PHPSNRNALLLRGRNMQGGGTYPCELRRRPTTSKSHE*ATVNYYSFNFL 235
           PHP N   +LL G N Q   + P     R       + A  + + F FL
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSPLNPYIRTIIKNRRDYAERHGFKFEFL 145


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 274 MTFTGGRTSSEFAWVGTTTLHISAAKQ*C--VSVRRVGPP 387
           + +TGG  SS F+W GTT       K+ C  +SV  +  P
Sbjct: 751 VVYTGG--SSNFSWWGTTVSSAGCDKKGCAHLSVSDISKP 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,877
Number of Sequences: 5004
Number of extensions: 42569
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)