Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0619
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0216 - 42071041-42071496                                         31   0.55 
09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544           28   5.1  
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080...    28   6.8  

>01_07_0216 - 42071041-42071496
          Length = 151

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 449 SCRCLWAAVTT*DQAGRELVTQLSNKKKSNKISTHL 556
           +CRCL  A    +  GR  +T LS K   +K+ THL
Sbjct: 85  TCRCLREAFAMYEMEGRGCITPLSLKLMLSKLGTHL 120


>09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544
          Length = 165

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 372 SNRNALLLRGRNMQGGGTYPCELRRRPTTSKSHE*ATVNYYSFNFLLSIYSYLYYRK 202
           + +NA   R R+M   G++ CE  R+         A   +  F  +L++Y Y+YY K
Sbjct: 92  ATKNAYHTRYRHMVYVGSWTCESLRKGVFI-----AGAVFVVFTMILNVYFYMYYTK 143


>11_06_0109 +
           20202629-20205452,20206354-20206578,20207208-20208091,
           20208692-20208814
          Length = 1351

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 530 FFYCLVE*RAHGPPDPKWLLQPIDIYNLNDAN 435
           +FYC       GP  PKWL   +DI  L+ AN
Sbjct: 519 YFYCC----QMGPMFPKWLQTQVDIIELDIAN 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,278
Number of Sequences: 37544
Number of extensions: 286914
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)