Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0619
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_50994| Best HMM Match : PAN (HMM E-Value=0.049)                     28   6.9  
SB_14893| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_57603| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               27   9.1  
SB_2799| Best HMM Match : rve (HMM E-Value=7.8e-26)                    27   9.1  

>SB_56974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 785

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 218 IYITGNAVKSFIVWSN*YHYVMSYQYYEQILMRQKTLMA 102
           IY TG+++    +  + YH +++  YYE I+  ++T++A
Sbjct: 455 IYSTGSSLTIATIAVDRYHSIVNCLYYETIVTHKRTVLA 493


>SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 402 IFTVQRRPHPSNRNALLL 349
           +FT+QR+PHPS    +LL
Sbjct: 2   VFTLQRKPHPSQMLGILL 19


>SB_50994| Best HMM Match : PAN (HMM E-Value=0.049)
          Length = 144

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 402 IFTVQRRPHPSNRNALLL 349
           +FT+QR+PHPS    +LL
Sbjct: 2   VFTLQRKPHPSQMLGILL 19


>SB_14893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 735

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 362 THYCFAAEICRVVVPTHANSEDVLPPVKVMNEPP 261
           THY  +    R+  P +A ++ V+P ++  N+PP
Sbjct: 172 THYGRSHHSIRLEPPVYATTKPVVPNMRPTNQPP 205


>SB_57603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 394 STTAAPPFEPKRITASRQKYAGWWYLPMRTQKT 296
           S+TA P ++  RIT  R K A W  L    ++T
Sbjct: 77  SSTAVPYYQWHRITLRRTKMANWLQLTANLRET 109


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 393 VQRRPHPSNRNALLLRGRNMQ 331
           VQRRP P+ RN++ L G   Q
Sbjct: 30  VQRRPEPTPRNSIFLHGLRAQ 50


>SB_2799| Best HMM Match : rve (HMM E-Value=7.8e-26)
          Length = 1058

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 394 STTAAPPFEPKRITASRQKYAGWWYLPMRTQKT 296
           S+TA P ++  RIT  R K A W  L    ++T
Sbjct: 776 SSTAVPYYQWHRITLRRTKMANWLQLTANLRET 808


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,946,593
Number of Sequences: 59808
Number of extensions: 305235
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)