Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0619
         (614 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089259-1|AAL89997.1|  353|Drosophila melanogaster AT04640p pro...    29   6.6  
AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p pro...    28   8.7  
AF097636-1|AAF63187.1| 1368|Drosophila melanogaster bicoid-inter...    28   8.7  
AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB,...    28   8.7  
AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA,...    28   8.7  

>AY089259-1|AAL89997.1|  353|Drosophila melanogaster AT04640p
           protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 374 LRTETHYCFAAEICRVVVPTHANSEDVLPPVKVMNEP 264
           + T+T     A +C VVV  H N E V P     +EP
Sbjct: 314 VETDTRTLVQANLCNVVVIQHLNEEQVEPLSSDASEP 350


>AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p protein.
          Length = 1367

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 236  YCRYIRIYITGNAVKSFIVWSN*YHYVMSYQYYEQI 129
            +CR I++Y  G+   + + WS+ Y+    Y+ Y  I
Sbjct: 1103 FCRPIQLYAKGDYTPNHVRWSDAYYPQTPYEAYRGI 1138


>AF097636-1|AAF63187.1| 1368|Drosophila melanogaster
            bicoid-interacting protein BIN3 protein.
          Length = 1368

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 236  YCRYIRIYITGNAVKSFIVWSN*YHYVMSYQYYEQI 129
            +CR I++Y  G+   + + WS+ Y+    Y+ Y  I
Sbjct: 1104 FCRPIQLYAKGDYTPNHVRWSDAYYPQTPYEAYRGI 1139


>AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB,
            isoform B protein.
          Length = 1367

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 236  YCRYIRIYITGNAVKSFIVWSN*YHYVMSYQYYEQI 129
            +CR I++Y  G+   + + WS+ Y+    Y+ Y  I
Sbjct: 1103 FCRPIQLYAKGDYTPNHVRWSDAYYPQTPYEAYRGI 1138


>AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA,
            isoform A protein.
          Length = 1367

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 236  YCRYIRIYITGNAVKSFIVWSN*YHYVMSYQYYEQI 129
            +CR I++Y  G+   + + WS+ Y+    Y+ Y  I
Sbjct: 1103 FCRPIQLYAKGDYTPNHVRWSDAYYPQTPYEAYRGI 1138


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,946,363
Number of Sequences: 53049
Number of extensions: 488652
Number of successful extensions: 1105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)