Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0619
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92849-3|CAB07425.1|  324|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    29   2.0  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    28   6.1  

>Z92849-3|CAB07425.1|  324|Caenorhabditis elegans Hypothetical
           protein H12D21.4 protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 485 PKWLLQPIDIYNLNDANYLET*VVLRSKF 399
           P+WL+Q  D   + DA+Y+ET  +  +KF
Sbjct: 30  PQWLMQNFDNVRIIDASYVETAALNNAKF 58


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 488 QAGRELVTQLSNK-KKSNKISTHL*RKYEKTFKKPLKISI 604
           Q  +E VT+ + K KK  K  T   R+ EKT KKP KI +
Sbjct: 526 QTLKEHVTRETRKLKKEEKKETQTTRECEKTMKKPEKIDL 565


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 527 FYCLVE*RAHGPPDPKWLLQPIDIYNLNDANYLE 426
           +YCLV      P   KWL +P  IY+  DA +LE
Sbjct: 615 YYCLVAMEFISPIQTKWLAEP--IYHDFDAPWLE 646


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,747,954
Number of Sequences: 27780
Number of extensions: 246193
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)