Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0619
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -3

Query: 357  LLLRGRNMQGGGTYPCELRRRPTTSKSHE*ATV 259
            L+L     Q GG Y C++       K H   TV
Sbjct: 1369 LMLSNLQSQDGGDYTCQVENAQGNDKLHYTLTV 1401


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -3

Query: 357  LLLRGRNMQGGGTYPCELRRRPTTSKSHE*ATV 259
            L+L     Q GG Y C++       K H   TV
Sbjct: 1365 LMLSNLQSQDGGDYTCQVENAQGNDKLHYTLTV 1397


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 88  NIHELFIYTNIIMRKDLFVCLSETTE 11
           N+HE   ++   MR   F+C +ET +
Sbjct: 102 NLHEYLKFSYPRMRAPSFICENETRQ 127


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 323 VPTHANSEDVLPPVKVMNEP 264
           +P   N+E +LP V+++ +P
Sbjct: 34  IPREMNTERLLPYVEIIEQP 53


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 323 VPTHANSEDVLPPVKVMNEP 264
           +P   N+E +LP V+++ +P
Sbjct: 34  IPREMNTERLLPYVEIIEQP 53


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 398 LQYNGGPTLRTETHYCF 348
           +  N G  L  ETH CF
Sbjct: 378 IDINNGAELMQETHVCF 394



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 26  QTNKQIFPHYNISI 67
           Q+N+Q FPH+ I +
Sbjct: 912 QSNQQHFPHHQIQV 925


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 509 TQLSNKKKSNKISTHL*RKYEKTFKKPLKI 598
           TQ+ +  KS      + RK+E+ F+K L++
Sbjct: 197 TQIGSSMKSVGEVMAIGRKFEEAFQKALRM 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,805
Number of Sequences: 438
Number of extensions: 3407
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)