Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0619
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71400.1 68414.m08246 disease resistance family protein / LRR...    29   3.2  
At4g33630.2 68417.m04778 expressed protein                             27   7.5  
At4g33630.1 68417.m04777 expressed protein                             27   7.5  

>At1g71400.1 68414.m08246 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 847

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 428 QGSWRHLSCRCLWAAVTT*DQAGRELVTQLSNKKKSNKISTH 553
           +G W   +  CLW  VT  D++G+ +   + N   +N + T+
Sbjct: 62  RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTN 103


>At4g33630.2 68417.m04778 expressed protein
          Length = 684

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 215 YITGNAVKSFIVWSN*YHYVMSY 147
           Y+ G  V  F+ W+  YH+VM +
Sbjct: 655 YVKGGPVVGFVYWAPEYHFVMFF 677


>At4g33630.1 68417.m04777 expressed protein
          Length = 684

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 215 YITGNAVKSFIVWSN*YHYVMSY 147
           Y+ G  V  F+ W+  YH+VM +
Sbjct: 655 YVKGGPVVGFVYWAPEYHFVMFF 677


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,851,330
Number of Sequences: 28952
Number of extensions: 224902
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)