Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0618
(549 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 182 2e-46
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 182 2e-46
SB_56| Best HMM Match : Actin (HMM E-Value=0) 182 2e-46
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 182 2e-46
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 182 2e-46
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 6e-29
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 6e-20
SB_54| Best HMM Match : Actin (HMM E-Value=0) 88 4e-18
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 71 5e-13
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 64 7e-11
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 53 2e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 2e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 40 0.001
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 31 0.47
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.47
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 30 1.4
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 1.4
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.4
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 29 1.9
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 29 1.9
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 29 1.9
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 2.5
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_55327| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 182 bits (443), Expect = 2e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 434
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 435 MTQIMFETFNTPAMYVAIQAVLSL 506
MTQIMFETFN+PAMYVAIQAVLSL
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSL 143
Score = 125 bits (302), Expect = 2e-29
Identities = 57/62 (91%), Positives = 61/62 (98%)
Frame = +1
Query: 79 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 258
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA+
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 259 AK 264
+K
Sbjct: 61 SK 62
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 182 bits (443), Expect = 2e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 434
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
Query: 435 MTQIMFETFNTPAMYVAIQAVLSL 506
MTQIMFETFN+PAMYVAIQAVLSL
Sbjct: 119 MTQIMFETFNSPAMYVAIQAVLSL 142
Score = 122 bits (295), Expect = 1e-28
Identities = 55/60 (91%), Positives = 60/60 (100%)
Frame = +1
Query: 85 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 264
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 182 bits (443), Expect = 2e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 434
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
Query: 435 MTQIMFETFNTPAMYVAIQAVLSL 506
MTQIMFETFN+PAMYVAIQAVLSL
Sbjct: 119 MTQIMFETFNSPAMYVAIQAVLSL 142
Score = 124 bits (298), Expect = 6e-29
Identities = 56/60 (93%), Positives = 60/60 (100%)
Frame = +1
Query: 85 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 264
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 182 bits (443), Expect = 2e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 434
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 435 MTQIMFETFNTPAMYVAIQAVLSL 506
MTQIMFETFN+PAMYVAIQAVLSL
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSL 143
Score = 130 bits (313), Expect = 1e-30
Identities = 58/62 (93%), Positives = 62/62 (100%)
Frame = +1
Query: 79 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 258
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA+
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 259 AK 264
+K
Sbjct: 61 SK 62
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 182 bits (443), Expect = 2e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 434
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 435 MTQIMFETFNTPAMYVAIQAVLSL 506
MTQIMFETFN+PAMYVAIQAVLSL
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSL 143
Score = 125 bits (302), Expect = 2e-29
Identities = 55/62 (88%), Positives = 61/62 (98%)
Frame = +1
Query: 79 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 258
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA+
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 259 AK 264
+K
Sbjct: 61 SK 62
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 124 bits (298), Expect = 6e-29
Identities = 55/60 (91%), Positives = 60/60 (100%)
Frame = +1
Query: 85 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 264
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA++K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 350
QSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +3
Query: 423 NREKMTQIMFETFNTPAMYVAIQAVLSL 506
N + M +IMFETFN+PAMYVAIQAVLSL
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSL 105
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 94.3 bits (224), Expect = 6e-20
Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 RGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMT 440
R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM
Sbjct: 65 RYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMI 124
Query: 441 QIMFETFNTPAMYVAIQAVLSL 506
++MFE + +Y+AIQAVL+L
Sbjct: 125 EVMFENYQFEGVYIAIQAVLTL 146
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 97 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEA 255
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEA 61
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 88.2 bits (209), Expect = 4e-18
Identities = 39/59 (66%), Positives = 49/59 (83%)
Frame = +3
Query: 330 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 506
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++L
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMAL 2187
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 204
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 71.3 bits (167), Expect = 5e-13
Identities = 29/43 (67%), Positives = 38/43 (88%)
Frame = +3
Query: 378 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 506
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSL
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSL 168
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 64.1 bits (149), Expect = 7e-11
Identities = 26/72 (36%), Positives = 46/72 (63%)
Frame = +3
Query: 288 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 467
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 468 PAMYVAIQAVLS 503
PA ++ +VL+
Sbjct: 63 PAFFLCKNSVLT 74
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 204
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +1
Query: 73 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 243
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 244 GDEARAK 264
GD A AK
Sbjct: 753 GDAAVAK 759
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 282 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 395
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 201 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 85
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +3
Query: 444 IMFETFNTPAMYVAIQAVLSL 506
IMFE FN+PA+YVAIQAVLSL
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSL 21
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 279 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 431
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 176 GNTARGASSPAKPALHIPEPLSTT 105
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 448 CSKHSTRPPCTSPSKPCSRCSVRSYHRYRAG 540
C H+ R P T+PS PC + S Y AG
Sbjct: 360 CYSHARREPSTAPSLPCDLVAATSAKMYLAG 390
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 176 GNTARGASSPAKPALHIPEPLSTT 105
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 176 GNTARGASSPAKPALHIPEPLSTT 105
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 404 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 496
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 171 VPLDRGKAPPSGRDGRYGTEGLLCRR*GQSKRGILTLKYPIEHGIVTNW--DDMEKIWHH 344
V L + +GR+ G+ +CR+ K ++TL + I G+ + D EK+W+H
Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRK----KAPLITLSHVIRMGLALSLVSDVKEKVWYH 496
Query: 345 TFYN 356
T N
Sbjct: 497 TCPN 500
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 234 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 124
V+LSH + H M D +HG RS SCET L T
Sbjct: 224 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 288 PIEHGIVTNWDDMEKIWHHTFYNE 359
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 91 EVAALVVDNGSGMCKAGFAGDDAPRAV 171
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 234 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 124
V+LSH + H M D +HG RS SCET L T
Sbjct: 419 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 234 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 124
V+LSH + H M D +HG RS SCET L T
Sbjct: 282 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 234 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 124
V+LSH + H M D +HG RS SCET L T
Sbjct: 260 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 234 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 124
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 234 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 124
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 234 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 124
V+LSH + H M D +HG RS SCET L T
Sbjct: 136 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 234 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 124
++LSH + H M D +HG RS SCET L T
Sbjct: 184 IVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 176 GNTARGASSPAKPALHIPEPLSTT 105
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 176 GNTARGASSPAKPALHIPEPLSTT 105
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = -3
Query: 328 SMSSQLVTIPCSMGYLRVRIPLLLWPHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEHHL 149
+++SQ VT M R +PL+ +P + KSP V + P PD + R E HH
Sbjct: 792 ALTSQQVTSSHDMP--RTSMPLVSYPPHMKKSPFVVHHP--PDSAS--RHGNQAPEAHH- 844
Query: 148 LRNRPCTYRS 119
+ P +Y+S
Sbjct: 845 --HEPGSYKS 852
>SB_55327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 451 SKHSTRPPCTSPSKPCSRCSVRSYHRYRAG 540
S S R P T+PS PC + S Y AG
Sbjct: 492 SGSSAREPSTAPSLPCDLVAATSAKMYLAG 521
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 191 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 81
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 247 LLHKSPSVPYRPS--RPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPT 101
LL +S P +P+ RP GGA P++ ++ + N+ T+ PT
Sbjct: 92 LLDESTEAPPQPATIRPQGGALPQTPVKGKQNKRVSDNKEFTHAMQARRPT 142
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 253 PHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLLRR 83
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,877,872
Number of Sequences: 59808
Number of extensions: 486999
Number of successful extensions: 1693
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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