Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0617
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.16
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 27 2.6
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 27 2.6
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 27 2.6
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 26 4.5
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 6.0
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 25 6.0
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 6.0
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 7.9
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.16
Identities = 29/97 (29%), Positives = 39/97 (40%)
Frame = -3
Query: 389 YGRLGPAHPSPEYRISQRQVPFMQSPRPLQLSAQPAPFAATDITAPRSKPTTNACYDQRR 210
+G + PAHP +S V QS P Q+SA P + P S P A
Sbjct: 1678 FGGMAPAHP-----VSTPPVR-PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Query: 209 RPPLFATVAVIFIN*NSRCWKIHNFVSLNTISQTVTT 99
PPL A+ A N R + + + +TVTT
Sbjct: 1732 PPPLPASSAPSVPNPGDRSALLQQIHTGTRLKKTVTT 1768
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/76 (23%), Positives = 30/76 (39%)
Frame = -3
Query: 437 AHTKATTRNTPPIHA*YGRLGPAHPSPEYRISQRQVPFMQSPRPLQLSAQPAPFAATDIT 258
AH A + N H+ + P PS YRI ++ + +SA P P A +
Sbjct: 622 AHEDAQSSNLSQNHSLFYERIPQRPS--YRIEKQNKGIYEDENEQSISAMPIPRAHPQLP 679
Query: 257 APRSKPTTNACYDQRR 210
T +D+++
Sbjct: 680 KNLLSQTAGPLWDEQQ 695
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/78 (21%), Positives = 34/78 (43%)
Frame = +1
Query: 319 CMNGTCLCEIRYSGEGCAGPNLPYHACIGGVFLVVAFVCAVQLMICVVTEYRKLKAPTFL 498
C+ T + + G P + IG + F+ A+ +ICV+T ++ P++L
Sbjct: 98 CLISTIMTIFAHIGAIARSPG--FFNVIGTITFFNIFITAIAFVICVITFVPHIQWPSWL 155
Query: 499 RACRSPTQKMLYLVAFLA 552
Q ++ L+ +A
Sbjct: 156 VLANVGIQLIVLLLLLVA 173
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 172 LTEILVVGKSTISFH*TQFRRQSLLHFIKRMKTILAD 62
++E V G + H + + Q L H+IK M+ +LAD
Sbjct: 120 ISETSVSGIMSTCTHGSSLQHQVLPHYIKSMRIMLAD 156
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 400 IGGVFLVVAFVCAVQLMICVVTEYRKLK 483
+GG FL+V + L I V+T Y K
Sbjct: 246 VGGFFLIVILIIPETLPIKVITRYENAK 273
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 278 FAATDITAPRSKPTTNACYDQRRRPPLFATVA 183
FAA+D+ +P P+ + Y Q PP +V+
Sbjct: 396 FAASDMPSPMELPSPSTVYHQVFYPPTSTSVS 427
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 374 PAHPSPEYRISQRQVPFMQSPRPLQLSAQPAPFAATDITAP 252
PA P + P + P P + A P+P AAT AP
Sbjct: 272 PAMPMMNVPMGPGGAPLVPPPPPGMVMASPSPAAATIPGAP 312
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 248 SKPTTNACYDQRRRPPLFATVAVIFIN*NSRCWKIHNFVSLNT 120
S+P NACY + +AT + IN K+ + NT
Sbjct: 34 SEPARNACYSPNGKLFAYATATQVVINDTESGAKLTQLPAANT 76
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 374 PAHPSPEYRISQRQVPFMQSPRPLQLSAQPAPFAATDITAPRSKPTTNACYDQRRRP 204
PA P +S++ +P P +L +P PF +T + P S+P + + P
Sbjct: 37 PAFMEPA-PVSKKPLP----PPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQREASP 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,134
Number of Sequences: 5004
Number of extensions: 41904
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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