Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0617
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 34 0.071
03_05_0577 - 25777457-25778155 31 0.87
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 30 1.1
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 30 1.1
07_03_0524 - 19037638-19038294 30 1.5
09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149 29 2.0
12_01_0808 + 7418878-7420476 29 2.7
06_03_1210 + 28442253-28442967,28443338-28443405 29 2.7
11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918... 29 3.5
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 28 4.6
05_04_0259 + 19494629-19495394,19495408-19495949 28 4.6
09_03_0183 - 13198005-13198024,13199044-13199506 28 6.1
03_05_0665 + 26554362-26554796 28 6.1
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944... 28 6.1
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 27 8.1
06_03_1373 + 29667871-29668782,29668872-29669851,29670156-296703... 27 8.1
02_05_0686 - 30900748-30902167,30903442-30904742 27 8.1
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 27 8.1
01_01_0177 + 1512181-1512286,1512373-1513280 27 8.1
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 34.3 bits (75), Expect = 0.071
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 289 CALSCSGRGDCMNGTCLCEIRYSGEGCAGPN 381
C CSG G C G C C+ Y G C+ P+
Sbjct: 266 CINQCSGHGHCRGGFCQCDGGYFGIDCSMPS 296
>03_05_0577 - 25777457-25778155
Length = 232
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +1
Query: 184 ATVANSGGLRRWS*HAFVVGLLRGAVMSVAAKGAGCALSCSGRGDCMNGTCLCEIRYSGE 363
A V + GG + + + + G GC SG G C G C ++R +
Sbjct: 40 AAVPSGGGTKLDPGQTWTINVPAGTTGGRVWARTGCGFDGSGNGQCQTGDCGGKLRCTAY 99
Query: 364 GCAGPN 381
G A PN
Sbjct: 100 G-AAPN 104
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 139 ISFH*TQFRRQSLLHFIKRM--KTILAD*FQKIHETKFIVDTEQNRY 5
IS+H R +SL +M K + D IH + +VDTEQ+ Y
Sbjct: 507 ISYHSLSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVDTEQDCY 553
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 289 CALSCSGRGDCM-NGTCLCEIRYSGEGCA 372
C C+G G C NG C CE ++G C+
Sbjct: 568 CPAKCTGHGICKANGICECESGWTGIDCS 596
>07_03_0524 - 19037638-19038294
Length = 218
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 374 PAHPSPEYRISQRQVPFMQSPRPLQLSAQPAPFAATDITAPRSKPT 237
P HPSP+ +R + P P + +PA AA TA PT
Sbjct: 43 PLHPSPD---DERSADVLAMPAPPPVPGRPATSAAAAATANEPTPT 85
>09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149
Length = 331
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +1
Query: 286 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGPNLPYHACIG 405
GC G G C G C + G G A P + +G
Sbjct: 82 GCVFDADGAGVCQTGDCGGRVECRGAGAAPPATLFEVTLG 121
>12_01_0808 + 7418878-7420476
Length = 532
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -3
Query: 335 QVPFMQSPRPLQLSAQPAPFAATDITAPRSKPTTNACYDQRRRPPLFATVAVIFI 171
QVP P P Q + PAP T T P S A + +P + +A+I I
Sbjct: 290 QVPCRAVPPPTQ--SPPAPTTTTTTTTPSSASAAAAAASEHHQPIRTSLIALISI 342
>06_03_1210 + 28442253-28442967,28443338-28443405
Length = 260
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 286 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGP 378
GC+ +GRG C G C + +G G A P
Sbjct: 79 GCSFDAAGRGRCATGDCGGALYCNGAGGAPP 109
>11_08_0089 -
28288129-28288832,28290702-28290831,28291563-28291856,
28292000-28292098,28292199-28292285,28292524-28292805
Length = 531
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 286 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGP 378
GC+ GRG C G C +R +G A P
Sbjct: 362 GCSFDSRGRGSCATGDCGGVLRCNGAAGATP 392
>08_02_1204 -
25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 370 AGPNLPYHACIGGVFLVVAFVCAVQLM 450
AGPNLP C+ GV CA+ L+
Sbjct: 298 AGPNLPPGGCLAGVGAATDSSCALSLL 324
>05_04_0259 + 19494629-19495394,19495408-19495949
Length = 435
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +1
Query: 274 AKGAGCALSCSGRGD--CMNGTC 336
AK A CA CSG C+N TC
Sbjct: 102 AKSAACATGCSGAASPGCLNDTC 124
>09_03_0183 - 13198005-13198024,13199044-13199506
Length = 160
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 294 AQLQRPGRLHERHLSLRDPVLGRGMRRT 377
A ++ GR H RHL LR G MRRT
Sbjct: 5 AVMRAEGRHHVRHLLLRSHHCGPSMRRT 32
>03_05_0665 + 26554362-26554796
Length = 144
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 296 SAQPAPFAAT--DITAPRSKPTTNACYDQRRRPPLFAT 189
SAQP+P ++ D++ +T+AC D PP+ AT
Sbjct: 11 SAQPSPDRSSNLDLSPSNDHDSTDACTDPTATPPVGAT 48
>02_02_0363 +
9446055-9446524,9446658-9446771,9446856-9447281,
9447812-9447893,9447964-9448020,9448633-9448881,
9448978-9449109,9449163-9449291
Length = 552
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 253 GAVMSVAAKGAGCALSCSGRGDC 321
G+ +VA G GCA++ SG DC
Sbjct: 431 GSGSNVARGGGGCAVAASGGNDC 453
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 577 EVSSPVSGRRGKRPDTASSGSVTCKPSGKS 488
++SSP+ R ++PD S+ + KPS KS
Sbjct: 441 DISSPLDEIRSEKPDDISARESSVKPSYKS 470
>06_03_1373 +
29667871-29668782,29668872-29669851,29670156-29670350,
29670460-29670676
Length = 767
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Frame = -3
Query: 245 KPTTNACYDQRRR--PPL 198
KPT+N CY+ RRR PP+
Sbjct: 512 KPTSNECYETRRRQQPPM 529
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = -3
Query: 341 QRQVPFMQSPRPLQLSAQPAPFAAT------DITAPRSKPTTNACYDQRRRPPLFATVAV 180
+R++ + P P S+QPA AAT D AP KP ++R P F +
Sbjct: 831 KRKLQQQKKPTPPPSSSQPAAPAATTKGAADDAPAPAQKPPEEVDSKRKRVMPRFPNLPA 890
Query: 179 IFIN*NS 159
F+ N+
Sbjct: 891 HFMKDNA 897
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 519 PEDAVSGRFPRLPDTGE 569
PEDA G PR+PD GE
Sbjct: 62 PEDAGEGEQPRVPDLGE 78
>01_01_0177 + 1512181-1512286,1512373-1513280
Length = 337
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 438 GAHEGDDEEHSADTRMIR 385
G+H+GDD H DT IR
Sbjct: 289 GSHKGDDRAHKMDTAKIR 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,118,801
Number of Sequences: 37544
Number of extensions: 319270
Number of successful extensions: 1181
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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