Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0617
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         25   0.54 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.6  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   6.6  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   8.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.7  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
 Frame = +1

Query: 283 AGCALSCSGR----GDCMNGTCLC 342
           + CA+ C  +    G C NG C+C
Sbjct: 79  SACAIRCLAQRRKGGSCRNGVCIC 102


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 269 TDITAPRSKPTTNACYDQRRRPPLFAT 189
           T I+   ++PT N C D R+RP   AT
Sbjct: 867 TSISHENNQPTMNKCSD-RKRPASQAT 892


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 526 SSGSVTCKPSGK 491
           SSGSV+C PS K
Sbjct: 153 SSGSVSCVPSVK 164


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +1

Query: 271 AAKGAGCALSCSGRGDCMNGTCLC 342
           +A  A C       G C  G C+C
Sbjct: 58  SACAANCLSLGKAGGHCEKGVCIC 81


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
 Frame = +1

Query: 283 AGCALSCS--GR--GDCMNGTCLC 342
           + CA +C   G+  G C  G C+C
Sbjct: 33  SACAANCHSLGKAGGHCEKGVCIC 56


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 535 DTASSGSVTCK 503
           D+ASSG+V CK
Sbjct: 97  DSASSGNVYCK 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,743
Number of Sequences: 438
Number of extensions: 2996
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)