Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0617
(577 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42620.1 68418.m05188 expressed protein 37 0.008
At3g57630.2 68416.m06421 exostosin family protein contains Pfam ... 33 0.10
At3g57630.1 68416.m06420 exostosin family protein contains Pfam ... 33 0.10
At5g24620.1 68418.m02908 thaumatin-like protein, putative simila... 33 0.14
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 32 0.32
At4g18550.1 68417.m02748 lipase class 3 family protein similar t... 29 2.2
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro... 28 3.9
At5g06640.1 68418.m00750 proline-rich extensin-like family prote... 28 5.1
At4g11650.1 68417.m01862 osmotin-like protein (OSM34) nearly ide... 28 5.1
At1g18250.1 68414.m02276 thaumatin, putative identical to SP|P50... 28 5.1
At5g49080.1 68418.m06074 proline-rich extensin-like family prote... 27 6.8
At3g45880.1 68416.m04965 hypothetical protein 27 9.0
At3g28550.1 68416.m03565 proline-rich extensin-like family prote... 27 9.0
At3g27190.1 68416.m03400 uracil phosphoribosyltransferase, putat... 27 9.0
At1g73620.1 68414.m08523 thaumatin-like protein, putative / path... 27 9.0
At1g19320.1 68414.m02402 pathogenesis-related thaumatin family p... 27 9.0
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 265 SVAAKGAGCALSCSGRGDCMNGTCLCEIRYSGEGCAGPNLP 387
SV + C SC+ GDC++G C C + Y G C + P
Sbjct: 595 SVVSVLGQCPNSCNFNGDCVDGKCRCLLGYHGHDCRNRSCP 635
Score = 31.1 bits (67), Expect = 0.55
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 277 KGAGCALSCSGRGDCMN-GTCLCEIRYSGEGCA 372
+ C +C+G G C G C+CE ++G C+
Sbjct: 630 RNRSCPNNCNGHGKCTTQGVCICENGFTGIDCS 662
>At3g57630.2 68416.m06421 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 791
Score = 33.5 bits (73), Expect = 0.10
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 289 CALSCSGRGDCMNGTCLCEIRYSGEGCAGPN 381
C CSG G C G C C+ + G C+ P+
Sbjct: 275 CVNQCSGHGKCRGGFCQCDKGWFGTDCSIPS 305
>At3g57630.1 68416.m06420 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 793
Score = 33.5 bits (73), Expect = 0.10
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 289 CALSCSGRGDCMNGTCLCEIRYSGEGCAGPN 381
C CSG G C G C C+ + G C+ P+
Sbjct: 277 CVNQCSGHGKCRGGFCQCDKGWFGTDCSIPS 307
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 280 GAGCALSCSGRGDCMN--GTCLCEIRYSGEGCA 372
G C CSG+G C + G C C ++GE C+
Sbjct: 118 GRKCMSDCSGQGVCNHEFGLCRCFHGFTGEDCS 150
>At5g24620.1 68418.m02908 thaumatin-like protein, putative similar
to thaumatin-like protein [Arabidopsis thaliana]
GI:2435406; contains Pfam profile PF00314: Thaumatin
family
Length = 420
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 286 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGPNLPYHACIG 405
GC +G G CM G C ++ +G G A P + +G
Sbjct: 80 GCNFDANGAGKCMTGDCGGKLECAGNGAAPPTSLFEITLG 119
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -3
Query: 410 TPPIHA*YGRLGPAH-PSPEYRISQRQVPFMQSPRPLQLSAQPAPFAATDITAPRSKPTT 234
+PP+H+ P H P P Q P+ QSP + S P P + +P P
Sbjct: 456 SPPVHS---TPSPVHKPQPPKESPQPNDPYDQSPVKFRRSPPPPPVHSPPPPSPIHSPPP 512
Query: 233 NACYDQRRRPPLFA 192
Y PP+++
Sbjct: 513 PPVYSPPPPPPVYS 526
>At4g18550.1 68417.m02748 lipase class 3 family protein similar to
lipase [Dianthus caryophyllus] GI:4103627; contains Pfam
profile PF01764: Lipase
Length = 419
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 419 TRNTPPIHA*YGRLGPAHPSPEYRISQRQVPFMQSP 312
TRN P + Y +G + E+ I R+ P+M+SP
Sbjct: 297 TRNLPDVIPIYPPIGYSEVGDEFPIDTRKSPYMKSP 332
>At2g43800.1 68415.m05445 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 894
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = -3
Query: 434 HTKATTRNTPPIHA*YGRLGPAHPSPEYRISQRQVPFMQSPRPLQLSAQPAP 279
H K T TPP H + A+P P PF S P ++ P P
Sbjct: 64 HKKHLTTTTPPPHEKHLFSSVANPPPPPPSPPHPNPFFPSSDPTSTASHPPP 115
>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 689
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/73 (19%), Positives = 27/73 (36%)
Frame = -3
Query: 407 PPIHA*YGRLGPAHPSPEYRISQRQVPFMQSPRPLQLSAQPAPFAATDITAPRSKPTTNA 228
PP H+ ++ P P Y S P+ + + P P+ + P P+
Sbjct: 514 PPYHSPSPKVNYKSPPPPYVYSSHPPPYYSPSPKVNYKSPPPPYVYSSPPPPYYSPSPKV 573
Query: 227 CYDQRRRPPLFAT 189
Y P ++++
Sbjct: 574 NYKSPPPPYVYSS 586
>At4g11650.1 68417.m01862 osmotin-like protein (OSM34) nearly
identical to SP|P50700|OSL3_ARATH Osmotin-like protein
OSM34 precursor {Arabidopsis thaliana}; contains Pfam
profile PF00314: Thaumatin family
Length = 244
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +1
Query: 178 ITATVANSGGLRRWS*HAFVVGLLRGAVMSVAAKGAGCALSCSGRGDCMNGTCLCEIRYS 357
+ A + GG R + ++ + + G M+ C SGRG C G C ++ +
Sbjct: 35 VWAAASPGGGRRLDAGQSWRLDVAAGTKMARIWGRTNCNFDSSGRGRCQTGDCSGGLQCT 94
Query: 358 GEG 366
G G
Sbjct: 95 GWG 97
>At1g18250.1 68414.m02276 thaumatin, putative identical to SP|P50699
Thaumatin-like protein precursor {Arabidopsis thaliana};
strong similarity to pathogenesis-related group 5
protein GI:2749943 from [Brassica rapa]
Length = 243
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 286 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGP 378
GC SGRG C G C + +G G P
Sbjct: 76 GCTFDRSGRGHCATGDCGGSLSCNGAGGEPP 106
>At5g49080.1 68418.m06074 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 609
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/73 (19%), Positives = 28/73 (38%)
Frame = -3
Query: 407 PPIHA*YGRLGPAHPSPEYRISQRQVPFMQSPRPLQLSAQPAPFAATDITAPRSKPTTNA 228
PP ++ ++ P P Y S +P+ + + P P+ + P PT
Sbjct: 109 PPYYSPSPKIDYKSPPPPYVYSSPPLPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPTPKV 168
Query: 227 CYDQRRRPPLFAT 189
Y P ++++
Sbjct: 169 DYKSPPPPYVYSS 181
>At3g45880.1 68416.m04965 hypothetical protein
Length = 431
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 178 ITATVANSGGLRRWS*HAFVVGLLRGAVMSVAAKGAGCALSCSGRGD 318
I+ + + L+ WS A++ G L V+S+ GCA + +G D
Sbjct: 46 ISKAITHWPALKLWSDPAYLTGALSDDVVSLHLTPNGCADAVTGDSD 92
>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1018
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/73 (19%), Positives = 27/73 (36%)
Frame = -3
Query: 407 PPIHA*YGRLGPAHPSPEYRISQRQVPFMQSPRPLQLSAQPAPFAATDITAPRSKPTTNA 228
PP H+ ++ P P Y S P+ + + P P+ + P P+
Sbjct: 666 PPYHSPSPKVHYKSPPPPYVYSSPPPPYYSPSPKVHYKSPPPPYVYSSPPPPYYSPSPKV 725
Query: 227 CYDQRRRPPLFAT 189
Y P ++++
Sbjct: 726 VYKSPPPPYVYSS 738
>At3g27190.1 68416.m03400 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 483
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 309 PGRLHERHLSLRDPVLGRG 365
P + ERH+ L DPVLG G
Sbjct: 390 PSDISERHVLLLDPVLGTG 408
>At1g73620.1 68414.m08523 thaumatin-like protein, putative /
pathogenesis-related protein, putative strong similarity
to SP|P50699 Thaumatin-like protein precursor
{Arabidopsis thaliana}, pathogenesis-related group 5
protein [Brassica rapa] GI:2749943; contains Pfam
profile: PF00314 thaumatin family
Length = 264
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 286 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGP 378
GC+ SGRG C G C +G G P
Sbjct: 97 GCSFDRSGRGRCATGDCGGSFLCNGAGGVPP 127
>At1g19320.1 68414.m02402 pathogenesis-related thaumatin family
protein similar to SP:P28493 Pathogenesis-related
protein 5 precursor (PR-5) from [Arabidopsis thaliana],
thaumatin-like protein [Arabidopsis thaliana]
GI:2435406; contains Pfam profile PF00314: Thaumatin
family
Length = 247
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 289 CALSCSGRGDCMNGTCLCEIRYSGEGCAGP 378
C SG G C G C +++ +G G A P
Sbjct: 81 CNFDASGSGKCGTGDCGSKLKCAGAGGAPP 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,122
Number of Sequences: 28952
Number of extensions: 236908
Number of successful extensions: 1157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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