Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0616
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    28   1.00 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   3.0  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.0  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    26   4.0  

>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 477 LFTVRITGRLTDILSPIMTPMFAGFYFTKVKKDNIATF*KAKINI 611
           L++ RI   L +IL  ++TP+   F F    +D +  F +  IN+
Sbjct: 599 LYSYRIVNLLWEILGILLTPVLLFFTFPSCSQDIVDFFREHTINV 643


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 264 DHYNLQ*RRPDDKVRVPAIYSFTSADKVSLCY 169
           + YNL    P D  +V  +YSF   D++ + Y
Sbjct: 456 ESYNLLSYLPSDGAQVETLYSFPDLDQIYVAY 487


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = +1

Query: 160 INNITQAYFISGCERINSGYTNFVVGP--------TSLQIVVIVRAIRNNSSNSNWTNIG 315
           +NNI+     S  +R N  +   +V           SLQ+V+++    NN  N       
Sbjct: 125 VNNISSLLTSSSNQRFNDNHHKSIVKRIRHEIKCYNSLQLVLLLDECLNNIMNEKLYAYD 184

Query: 316 HDVFPAVIYA*NTIN 360
           HD  PA IYA  + N
Sbjct: 185 HDHSPA-IYASESFN 198


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 196 CERINSGYTNFVVGPTSLQIVVIVRAIRNNSSNSNWTN 309
           C   NSG  N V G   L    ++ A  +N +  +WT+
Sbjct: 97  CVVFNSGCANAVTGEGGLMDAQLITAEADNLTRPHWTS 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,413
Number of Sequences: 5004
Number of extensions: 50315
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)