Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0616
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366...    28   7.2  
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    28   7.2  

>05_04_0274 -
           19636163-19636280,19636359-19636423,19636485-19636637,
           19636738-19637043,19637137-19637314,19637452-19637687,
           19637835-19638032,19638171-19638293,19638729-19639013,
           19639186-19639326,19639799-19640188,19640465-19640647,
           19640934-19641020
          Length = 820

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 202 RINSGYTNFVVGPTSLQIVVIVRAIRNNSSNSN 300
           R   GYT  V GP  +++ V  RA  N   NS+
Sbjct: 360 RCEDGYTREVSGPEGVRVRVATRAKPNTDKNSS 392


>01_01_1209 -
           9738501-9738516,9738703-9739161,9739389-9739608,
           9739708-9739831,9739927-9740635,9741826-9742132,
           9742213-9743704
          Length = 1108

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 515 DVCEAARNSNCKESCYHAIETS*RHSTIRNCRSENVMKAIPE 390
           D+ +   N+N KESC  ++E +  H+TI+  R  +     PE
Sbjct: 767 DMTQIVINNNSKESCKRSLEEA--HATIKKLRIASTGTQSPE 806


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,872,980
Number of Sequences: 37544
Number of extensions: 294395
Number of successful extensions: 567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)