Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0616
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5247| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)                      28   5.6  
SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_5247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 158 SYRNNVFDEQTFA*DGNHVNSLVAKAAAMRKDVSR 54
           +Y++N F  +TF  D N VN L  KA  +  DV +
Sbjct: 80  AYKSNSFYCETFQMDSNRVNRLFRKAKKLGIDVEK 114


>SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)
          Length = 695

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 411 CHESNS*TIRNIETYMCIYCVLCVNYCWKHVMSNVSPV*IATIVTYRT 268
           CHE  +  + + E Y CI   + VN C + +  N+S V  +T   Y T
Sbjct: 168 CHEGATCRLLD-EKYECICPDISVNPCLERIEGNISQVLDSTSALYTT 214


>SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 220 TNFVVGPTSLQIVVIVRAIRNNSSNSNWTNIG 315
           T F+V  T L   +++RAIR    NSN T+ G
Sbjct: 44  TGFIVVITYLPTKLLIRAIRRAMVNSNTTSSG 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,304,161
Number of Sequences: 59808
Number of extensions: 380014
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)